BO28704.complete Sequence
820 bp assembled on 2011-09-14
GenBank Submission: KX796130
> BO28704.complete
GAAGTTATCAGTCGACATGCATACCCTCACGGCGGCCATTGAGATGGACA
AGCTGGATGCCAATCTTGAGCAGCAGTTTGATCTCAATCTCATCGAGGCT
GTCAAGCTGAACCCAGTGATATACGACAGGTCGCACTACAATTACAAGCA
CTTTGTGCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTG
TGCCTGAACAAAAATGTACGAAGCGCTGGAAGAGTCTGCGCGACAAGTTC
GCCCGCGAGATGAAACTATGTCAGGAATCGCGCTGGCGTTACTTCAAGCA
GATGCAATTCCTGGTTGACTCCATCCGCCAGTATCGAGAGTCGCTGCTCG
GCAAGTGCGCCAATGGGAGTCAAAGCGCCAACCAGGTGGCCGATCCGTCG
CAGCAGCAGCAGGCGCAGCAACAGACCGTCGTGGATATATTTGCACAGCC
CTTCAACGGCAGCGCCACAACCTCGGCCCAGGCACTGACCCATCCGCATG
AAATTACTGTCACCAGCGATGCACAGCTGGCCACTGCCGTGGGCAAGGAC
CAAAAGCCATACTTCTACGAGCCGCCGCTCAAGCGAGAGCGCAGTGAGGA
GGAGCACAGCGACAACATGCTCAACACCATCAAGATTTTCCAAAACAACG
TCTCGCAGGCGGTCAGCGCCGAGGACCAGTCGTTCGGCATGGTAGTCACG
GACATGCTCAACACGCTGGGCGTGCGACAAAAGGCAGAGGCGAAGGTGCA
CATCATCAAGTATCTGACGGACATGCAGCTTCTGGCACAGCACAACAAGT
ACGCAAGCTTTCTAGACCAT
BO28704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RC | 789 | CG15845-PC | 1..786 | 17..802 | 3930 | 100 | Plus |
Adf1-RE | 825 | CG15845-PE | 1..759 | 44..802 | 3795 | 100 | Plus |
Adf1-RB | 762 | CG15845-PB | 1..759 | 44..802 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RC | 1675 | CG15845-RC | 179..964 | 17..802 | 3930 | 100 | Plus |
Adf1-RE | 1668 | CG15845-RE | 173..957 | 18..802 | 3925 | 100 | Plus |
Adf1-RB | 1795 | CG15845-RB | 300..1084 | 18..802 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6667072..6667374 | 500..802 | 1515 | 100 | Plus |
2R | 25286936 | 2R | 6666719..6667013 | 206..500 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 6662569..6662757 | 18..206 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:17:37 has no hits.
BO28704.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 11:59:21 Download gff for
BO28704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RC | 180..965 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:10 Download gff for
BO28704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RC | 179..964 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:41 Download gff for
BO28704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RC | 179..964 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:41 Download gff for
BO28704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6662567..6662757 | 17..206 | 99 | -> | Plus |
2R | 6666720..6667013 | 207..500 | 100 | -> | Plus |
2R | 6667073..6667374 | 501..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:10 Download gff for
BO28704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2550072..2550262 | 17..206 | 99 | -> | Plus |
arm_2R | 2554225..2554518 | 207..500 | 100 | -> | Plus |
arm_2R | 2554578..2554879 | 501..804 | 99 | | Plus |
BO28704.pep Sequence
Translation from 16 to 820
> BO28704.pep
MHTLTAAIEMDKLDANLEQQFDLNLIEAVKLNPVIYDRSHYNYKHFVRKA
QTWKQIAETLGVPEQKCTKRWKSLRDKFAREMKLCQESRWRYFKQMQFLV
DSIRQYRESLLGKCANGSQSANQVADPSQQQQAQQQTVVDIFAQPFNGSA
TTSAQALTHPHEITVTSDAQLATAVGKDQKPYFYEPPLKRERSEEEHSDN
MLNTIKIFQNNVSQAVSAEDQSFGMVVTDMLNTLGVRQKAEAKVHIIKYL
TDMQLLAQHNKYASFLDH
BO28704.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-PC | 262 | CG15845-PC | 1..262 | 1..262 | 1355 | 100 | Plus |
Adf1-PB | 253 | CG15845-PB | 1..253 | 10..262 | 1311 | 100 | Plus |
Adf1-PA | 253 | CG15845-PA | 1..253 | 10..262 | 1311 | 100 | Plus |
Adf1-PE | 274 | CG15845-PE | 1..253 | 10..262 | 1311 | 100 | Plus |
CG10949-PB | 459 | CG10949-PB | 129..391 | 9..245 | 173 | 25.7 | Plus |