BO28708.complete Sequence
1504 bp assembled on 2011-08-24
GenBank Submission: KX797030
> BO28708.complete
GAAGTTATCAGTCGACATGTCGACGCCAGAGAACAAAATCCCGACGGTCA
CTGCGGGCTACGGAGAAAACGAGAAGCCCAAAGGCGGCAAAGGCGGGCAA
TCCAAGTTCATACGTTCGGACATGGCCGACGTACCCGTGCAGCAGGCGGC
AGGATCGACGCTTCCGTTGGTAATCTCTCGGAAAAAAGGCGACGACTCCG
AGGATGGCAACTACAATCCGTTCGAGCACCGCAAGGTGGAGCATCCGACA
TCGGATCTCGAGACATTTGTACACTTGCTAAAGGGATCGCTTGGCTCCGG
AATATTGGCCATGCCAATGGCCTTCTCCCACGCTGGATTGTGGTTCGGTT
TGGTGGCCACCTTCGCGGTGGGCACCTTGTGCACCTACTGCGTCCACATT
CTGGTCAAGTGCGCCCACATCCTGTGCCGACGTCGTAAAATCCCGATGAT
GGGATTCGCCGATGTGGCGGAACAGGCTTTCCTCGACGGACCACCTGCCC
TGAATCGCTGGTCACGCTTCATCCGGTTCATGGTCAATACGTTTCTGGTT
ATCGATTTGCTGGGCTGCTGCTGCATCTATCTGGTTTTCGTGGCCACCAA
TGTGGAGCAGGTCGTGCGGGTGTATATGGAAACGGAGCTGAGCATTAGAG
TTTGGATCATGATCGTGACGGCACCGCTAATCTTTATGTGCCTGGTACGC
AACCTGAAATTCCTCACGCCCTTCTCGATGATAGCCAACATCCTGATGTT
CGTGGGCATCGTGATCACCTTCATCTATATGTTCTCCGATATTCCTGCAC
CCGTGGAACGTCCTGGAATTGTGAGTGTAACCGAATGGCCATTGTTCTTC
GGCACCGTGATCTTTGCTCTGGAGGGCATCGGTGTAGTTATGTCCCTGGA
GAACGACATGAAGAACCCCAGCCACTTCATCGGTTGCCCATCTGTCCTGA
ACTTCGGCATGGGTCTGGTGATTGCCCTCTACACTCTGGTTGGATTCTTT
GGCTTCCTGAAGTACGGCCCGGAAACCCAGGCCAGCATTACGCTGAATCT
GCCCCTGGAGGATAAGTTGGCCCAATCCGTCAAGTTGATGATTGCCATCG
CCATCTTCTTCACCTTCACCCTGCAGTTCTACGTGCCCGTCACGATTTTG
TGGAAGGGTCTGGAGCACAAGATCCGGCCGGAGAAGCAGAACATCAGTGA
ATACGGACTTCGTGTCTTTCTGGTGCTTCTGTGCGGCGGAATCGCAGTGG
CTCTGCCCAACTTGGGACCTTTCATCTCGCTAATTGGAGCGGTGTGCCTG
AGTACGCTGGGCATGATCGTTCCGGCGACCATTGAGCTGGCCGTGTATCA
TGAGGATCCCGGATACGGGCGCTTCAATTGGCGGCTGTGGAAGAACTCCG
GACTGATACTGTTCGGCGTGGTGGGTTTCGTGGCCGGAACCTATGTCAGC
ATCATCGAATTCCACGCCGAATTCAGCAGCGGTCACGCAAGCTTTCTAGA
CCAT
BO28708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RD | 1473 | CG43693-PD | 1..1470 | 17..1486 | 7335 | 99.9 | Plus |
| CG43693-RG | 1719 | CG43693-PG | 265..1716 | 35..1486 | 7245 | 99.9 | Plus |
| CG43693-RB | 1509 | CG43693-PB | 55..1506 | 35..1486 | 7245 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RD | 2188 | CG43693-RD | 92..1562 | 16..1486 | 7340 | 99.9 | Plus |
| CG43693-RG | 2434 | CG43693-RG | 357..1808 | 35..1486 | 7245 | 99.9 | Plus |
| CG43693-RB | 2399 | CG43693-RB | 322..1773 | 35..1486 | 7245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11037620..11038434 | 1067..253 | 4060 | 99.9 | Minus |
| 3L | 28110227 | 3L | 11036984..11037245 | 1486..1225 | 1310 | 100 | Minus |
| 3L | 28110227 | 3L | 11037396..11037555 | 1225..1066 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 11039617..11039764 | 253..106 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 11039996..11040068 | 107..35 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:37:24 has no hits.
BO28708.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:24 Download gff for
BO28708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6327-RD | 91..1560 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:41 Download gff for
BO28708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RD | 93..1562 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:55 Download gff for
BO28708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RD | 93..1562 | 17..1488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:55 Download gff for
BO28708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11036981..11037244 | 1226..1488 | 99 | <- | Minus |
| 3L | 11037396..11037555 | 1066..1225 | 100 | <- | Minus |
| 3L | 11037622..11038434 | 253..1065 | 99 | <- | Minus |
| 3L | 11039618..11039764 | 106..252 | 100 | <- | Minus |
| 3L | 11039998..11040068 | 35..105 | 100 | <- | Minus |
| 3L | 11051262..11051279 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:41 Download gff for
BO28708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11030081..11030344 | 1226..1488 | 99 | <- | Minus |
| arm_3L | 11030496..11030655 | 1066..1225 | 100 | <- | Minus |
| arm_3L | 11030722..11031534 | 253..1065 | 99 | <- | Minus |
| arm_3L | 11032718..11032864 | 106..252 | 100 | <- | Minus |
| arm_3L | 11033098..11033168 | 35..105 | 100 | <- | Minus |
| arm_3L | 11044362..11044379 | 17..34 | 100 | | Minus |
BO28708.pep Sequence
Translation from 16 to 1504
> BO28708.pep
MSTPENKIPTVTAGYGENEKPKGGKGGQSKFIRSDMADVPVQQAAGSTLP
LVISRKKGDDSEDGNYNPFEHRKVEHPTSDLETFVHLLKGSLGSGILAMP
MAFSHAGLWFGLVATFAVGTLCTYCVHILVKCAHILCRRRKIPMMGFADV
AEQAFLDGPPALNRWSRFIRFMVNTFLVIDLLGCCCIYLVFVATNVEQVV
RVYMETELSIRVWIMIVTAPLIFMCLVRNLKFLTPFSMIANILMFVGIVI
TFIYMFSDIPAPVERPGIVSVTEWPLFFGTVIFALEGIGVVMSLENDMKN
PSHFIGCPSVLNFGMGLVIALYTLVGFFGFLKYGPETQASITLNLPLEDK
LAQSVKLMIAIAIFFTFTLQFYVPVTILWKGLEHKIRPEKQNISEYGLRV
FLVLLCGGIAVALPNLGPFISLIGAVCLSTLGMIVPATIELAVYHEDPGY
GRFNWRLWKNSGLILFGVVGFVAGTYVSIIEFHAEFSSGHASFLDH
BO28708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-PD | 490 | CG43693-PD | 1..490 | 1..490 | 2562 | 100 | Plus |
| CG43693-PG | 572 | CG43693-PG | 84..572 | 2..490 | 2534 | 99.2 | Plus |
| CG43693-PB | 502 | CG43693-PB | 15..502 | 3..490 | 2532 | 99.4 | Plus |
| CG43693-PA | 502 | CG43693-PA | 15..502 | 3..490 | 2532 | 99.4 | Plus |
| CG43693-PE | 499 | CG43693-PE | 14..499 | 5..490 | 2532 | 99.6 | Plus |
