BO28709.complete Sequence
618 bp assembled on 2011-08-24
> BO28709.complete
GAAGTTATCAGTCGACATGCGTCACGCTGTGATCCTTGTTTTCGTGTGTT
GCCTGCTGATCGCCTTAACCTCAGCCGGTTTGCTGGGCGGTGGAGGCGGT
GGTGGTGGCTACGGCGGTGGTGGTGGTGGTGGCTACGGCGGTGGTGGTGG
TGGTCAGAGCGGCTACGGCGGCGGTGGCCAAAAGAACGGAGGAGGCGGCC
ATGGAGGTGGCGGCCAGGGAAGCTACGGAGGCGGTAGCCAAGGTGGACAT
GGAGGCGGTGGCCAAGGAGGTTGGCAGAAGAACGGAGGAGGTGGTGGACA
AGGAGGCTATGGAGGTGGCAATCAAGGTGGCCACGGAGGACAAGGAGGTT
ATGGCGGCGGCGGTCATGGAGGCGGTGGCCATGCAAGCAAGTCCTTGGCC
GGCAATCGCGGTAGTTCCGTGTCCTGGCAGGGCGGAAATGGAGGCAACAA
GAACGGAGGCGGCGGAGGAGGTGGTGGTGGCCTGTACGGTGGTGGTGGCG
GTGGAGGTGGCAAACAACATGGCGGTGGCTGGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGAACGCGAGGTAAGTGGTCTATAATCGATAAATCAAT
AATTCAATTATATTCCGA
BO28709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5172-RD | 519 | CG5172-PD | 1..516 | 17..532 | 2580 | 100 | Plus |
| CG5172-RC | 321 | CG5172-PC | 1..277 | 17..293 | 1385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5172-RD | 788 | CG5172-RD | 106..621 | 17..532 | 2580 | 100 | Plus |
| CG5172-RC | 531 | CG5172-RC | 106..382 | 17..293 | 1385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17221547..17221773 | 17..243 | 1135 | 100 | Plus |
| X | 23542271 | X | 17222277..17222484 | 325..532 | 1040 | 100 | Plus |
| X | 23542271 | X | 17222124..17222211 | 241..328 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:37:39 has no hits.
BO28709.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:25 Download gff for
BO28709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5172-RD | 106..624 | 17..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:50 Download gff for
BO28709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5172-RD | 106..624 | 17..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:01 Download gff for
BO28709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5172-RD | 106..624 | 17..536 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:01 Download gff for
BO28709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17221547..17221772 | 17..242 | 100 | -> | Plus |
| X | 17222126..17222209 | 243..326 | 100 | -> | Plus |
| X | 17222279..17222498 | 327..549 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:50 Download gff for
BO28709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17115580..17115805 | 17..242 | 100 | -> | Plus |
| arm_X | 17116159..17116242 | 243..326 | 100 | -> | Plus |
| arm_X | 17116312..17116531 | 327..549 | 95 | -> | Plus |
BO28709.pep Sequence
Translation from 16 to 616
> BO28709.pep
MRHAVILVFVCCLLIALTSAGLLGGGGGGGGYGGGGGGGYGGGGGGQSGY
GGGGQKNGGGGHGGGGQGSYGGGSQGGHGGGGQGGWQKNGGGGGQGGYGG
GNQGGHGGQGGYGGGGHGGGGHASKSLAGNRGSSVSWQGGNGGNKNGGGG
GGGGGLYGGGGGGGGKQHGGGWASFLDHSFGARTRGKWSIIDKSIIQLYS
BO28709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5172-PD | 172 | CG5172-PD | 1..172 | 1..172 | 998 | 100 | Plus |
| CG5172-PC | 106 | CG5172-PC | 1..92 | 1..92 | 526 | 100 | Plus |
| CG14191-PA | 193 | CG14191-PA | 3..189 | 8..173 | 399 | 47.2 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 248..406 | 25..172 | 386 | 51.6 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 248..406 | 25..172 | 386 | 51.6 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 306..473 | 21..171 | 382 | 54.2 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 272..451 | 19..172 | 380 | 48.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 248..420 | 24..171 | 378 | 51.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 340..505 | 21..171 | 373 | 50.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 233..390 | 22..171 | 372 | 51.8 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 374..527 | 21..171 | 358 | 50 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 405..591 | 21..169 | 303 | 43.9 | Plus |
| CG14191-PA | 193 | CG14191-PA | 20..138 | 60..174 | 265 | 50.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 235..364 | 37..173 | 263 | 46.2 | Plus |
| CG14191-PA | 193 | CG14191-PA | 79..190 | 13..103 | 221 | 46 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 235..344 | 52..183 | 219 | 43.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 31..279 | 16..173 | 213 | 31.7 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 29..119 | 20..125 | 211 | 48.2 | Plus |
| CG14191-PA | 193 | CG14191-PA | 20..118 | 79..189 | 194 | 39.3 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 235..314 | 99..186 | 167 | 45.5 | Plus |
