Clone BO28710 Report

Search the DGRC for BO28710

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:287
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS34-RA
Protein status:BO28710.pep: Imported from assembly
Sequenced Size:598

Clone Sequence Records

BO28710.complete Sequence

598 bp assembled on 2011-08-24

GenBank Submission: KX798190

> BO28710.complete
GAAGTTATCAGTCGACATGGCCCAAAAAGTGATCAAGTACATCGGTCGCA
CCACAGACTTTCGCGGCAACACGCTGTGGGAGCTGGTCTCAAACCTGCCC
AACTGGGGTGTGGGCCGTCTGCTAATACGTAACATGTTCCAGCGATATCC
GGAGCCCTGCTACATGCGGATTCTGAAGGTGCAGTCCGTGGACGAGCAGC
CCGGCGAGATCCGCAAGGTGCGGGTCACTGTGGAGAAAACGTGGCGCGGC
GTAACGCAGCCAAAGCCTGTGGAAATCTACAGCACCAGCTATAAGGCGGA
CTACGAACTGGTGCCGCAGGATCAGGAAGCAAAGTATCTGAACAACAAGA
AGAAGGTTGAACCAGTGATACTGCCCACCAAGATTGAACTTCCGCCTCTG
CTCCGCGAACTGGTATCGGAGGAAACGGGCAACCCCAATCCCCAGATGAA
GGTCCACTACAAACTGACCGACAACAAAATGGCCAGATTAGCCAAGGATG
GAGAAAAGCCAACTGTTAACTTTGCCCTTGGTGTGGGCCAGCCGAAACCC
GTGAGCGCCAAGCTTTACGAAGGATTATTAGCAAGCTTTCTAGACCAT

BO28710.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS34-RA 567 CG42648-PA 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS34-RA 709 CG13037-RA 94..657 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16348167..16348730 17..580 2820 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:35:09 has no hits.

BO28710.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:20 Download gff for BO28710.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS34-RA 71..634 17..582 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:26 Download gff for BO28710.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS34-RA 94..657 17..582 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:55 Download gff for BO28710.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS34-RA 94..657 17..582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:55 Download gff for BO28710.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16348167..16348730 17..582 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:26 Download gff for BO28710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16341267..16341830 17..582 99   Plus

BO28710.pep Sequence

Translation from 16 to 598

> BO28710.pep
MAQKVIKYIGRTTDFRGNTLWELVSNLPNWGVGRLLIRNMFQRYPEPCYM
RILKVQSVDEQPGEIRKVRVTVEKTWRGVTQPKPVEIYSTSYKADYELVP
QDQEAKYLNNKKKVEPVILPTKIELPPLLRELVSEETGNPNPQMKVHYKL
TDNKMARLAKDGEKPTVNFALGVGQPKPVSAKLYEGLLASFLDH

BO28710.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS34-PA 188 CG13037-PA 1..188 1..188 987 100 Plus