BO28711.complete Sequence
289 bp assembled on 2011-08-24
GenBank Submission: KX799543
> BO28711.complete
GAAGTTATCAGTCGACATGGCTTTTAGGAACTGGTTTTCGCTTCCCGCCG
TCAGAGCTGATGACGAAGAGGACTTAGTTGACCCTCAAGCAGTTTTAAGG
GAAAAATGTCAAGCTAAAGGTCACATAGAATCCTTGTACAATAAGTACCA
AGAGTGCAATGATCGTGTTAATGGGCGATCCAAAACAACTGAGACTTGCA
TCGAAGAATTATTTGACTATGTTGCTGAGTTAGATCATTGCGTTTCGCAC
AGTCTTTTTACAAAGCTTAAGGCAAGCTTTCTAGACCAT
BO28711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ucrh-RD | 258 | CG41623-PD | 1..255 | 17..271 | 1275 | 100 | Plus |
Ucrh-RC | 258 | CG41623-PC | 1..255 | 17..271 | 1275 | 100 | Plus |
Ucrh-RB | 258 | CG41623-PB | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ucrh-RD | 506 | CG41623-RD | 95..349 | 17..271 | 1275 | 100 | Plus |
Ucrh-RC | 434 | CG41623-RC | 97..351 | 17..271 | 1275 | 100 | Plus |
Ucrh-RB | 416 | CG41623-RB | 79..333 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 25121043..25121214 | 100..271 | 860 | 100 | Plus |
3L | 28110227 | 3L | 25120902..25120991 | 17..106 | 435 | 98.9 | Plus |
2R | 25286936 | 2R | 8677379..8677576 | 58..255 | 435 | 81.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:35:28 has no hits.
BO28711.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:21 Download gff for
BO28711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucrh-RD | 102..356 | 17..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:35 Download gff for
BO28711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucrh-RB | 79..333 | 17..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:03 Download gff for
BO28711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucrh-RB | 79..333 | 17..273 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:03 Download gff for
BO28711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 25120902..25120985 | 17..100 | 100 | -> | Plus |
3L | 25121044..25121214 | 101..273 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:35 Download gff for
BO28711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 606358..606441 | 17..100 | 100 | -> | Plus |
3LHet | 606500..606670 | 101..273 | 98 | | Plus |
BO28711.pep Sequence
Translation from 16 to 289
> BO28711.pep
MAFRNWFSLPAVRADDEEDLVDPQAVLREKCQAKGHIESLYNKYQECNDR
VNGRSKTTETCIEELFDYVAELDHCVSHSLFTKLKASFLDH
BO28711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ucrh-PD | 85 | CG41623-PD | 1..85 | 1..85 | 456 | 100 | Plus |
Ucrh-PC | 85 | CG41623-PC | 1..85 | 1..85 | 456 | 100 | Plus |
Ucrh-PB | 85 | CG41623-PB | 1..85 | 1..85 | 456 | 100 | Plus |
CG30354-PB | 86 | CG30354-PB | 1..86 | 1..85 | 360 | 77.9 | Plus |
CG30354-PA | 86 | CG30354-PA | 1..86 | 1..85 | 360 | 77.9 | Plus |