BO28713.complete Sequence
491 bp assembled on 2011-08-24
> BO28713.complete
GAAGTTATCAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTC
GACTGGCGGCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATC
CAATCACAGGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGAC
CAGCCAGTTGAGCCAAGAGTGCCGTGGTCGCTGGCAAACGCAATTGGTGC
GCAGATACTCGGCGAAACCGCCGCTCTCGCTGAAGCTGATCAATGAGCGC
GTCTTGCTTGTGCTCAAGCTCTACGACAAGATCGATCCCAGCAAGCTCAA
CGTTGAGTCGCACTTCATCAACGACTTGGGACTGGATTCCTTGGACCACG
TGGAGGTCATCATGGCCATGGAGGACGAGTTCGGTTTCGAGATCCCCGAC
TCTGATGCCGAGAAGCTGCTTAAACCTGCCGACATTATTAAGTACGTCGC
CGACAAGGAGGATGTGTACGAGGCGAAGCTTTCTAGACCAT
BO28713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RA | 459 | CG9160-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
mtacp1-RC | 546 | CG9160-PC | 236..543 | 165..472 | 1540 | 100 | Plus |
mtacp1-RB | 432 | CG9160-PB | 250..429 | 293..472 | 900 | 100 | Plus |
mtacp1-RC | 546 | CG9160-PC | 1..154 | 17..170 | 755 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RA | 740 | CG9160-RA | 106..565 | 13..472 | 2285 | 99.8 | Plus |
mtacp1-RC | 739 | CG9160-RC | 345..652 | 165..472 | 1540 | 100 | Plus |
mtacp1-RB | 625 | CG9160-RB | 359..538 | 293..472 | 900 | 100 | Plus |
mtacp1-RC | 739 | CG9160-RC | 106..263 | 13..170 | 760 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331278..1331456 | 294..472 | 895 | 100 | Plus |
3L | 28110227 | 3L | 1330137..1330291 | 13..167 | 760 | 99.4 | Plus |
3L | 28110227 | 3L | 1331038..1331177 | 163..302 | 655 | 97.9 | Plus |
Blast to na_te.dros performed 2014-11-27 06:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 3462..3553 | 371..462 | 117 | 61.3 | Plus |
BO28713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:26 Download gff for
BO28713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RA | 253..708 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:59 Download gff for
BO28713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RA | 110..565 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:10 Download gff for
BO28713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RA | 110..565 | 17..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:10 Download gff for
BO28713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1331280..1331456 | 296..475 | 98 | | Plus |
3L | 1330141..1330290 | 17..166 | 100 | -> | Plus |
3L | 1331042..1331170 | 167..295 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:59 Download gff for
BO28713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1331042..1331170 | 167..295 | 100 | -> | Plus |
arm_3L | 1330141..1330290 | 17..166 | 100 | -> | Plus |
arm_3L | 1331280..1331456 | 296..475 | 98 | | Plus |
BO28713.pep Sequence
Translation from 16 to 490
> BO28713.pep
MSFTQIARSCSRLAATLAPRRVASGILIQSQASRMMHRIAVPSMTSQLSQ
ECRGRWQTQLVRRYSAKPPLSLKLINERVLLVLKLYDKIDPSKLNVESHF
INDLGLDSLDHVEVIMAMEDEFGFEIPDSDAEKLLKPADIIKYVADKEDV
YEAKLSRP
BO28713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-PA | 152 | CG9160-PA | 1..152 | 1..152 | 761 | 100 | Plus |
mtacp1-PC | 181 | CG9160-PC | 1..181 | 1..152 | 721 | 84 | Plus |
mtacp1-PB | 143 | CG9160-PB | 1..143 | 1..152 | 572 | 81.6 | Plus |