BO28714.complete Sequence
415 bp assembled on 2011-08-24
GenBank Submission: KX795554
> BO28714.complete
GAAGTTATCAGTCGACATGACTGAGGAAGTTAATCCCAAGGCATTCCCGC
TGGCCGATGCCCAGCTTACCGCCAAGATCATGAACTTGCTGCAGCAAGCA
TTGAACTACAATCAACTGCGCAAGGGAGCCAACGAGGCCACCAAGACCCT
CAATCGCGGACTGGCCGATATTGTGGTGCTGGCCGGTGATGCGGAGCCCA
TCGAGATTCTGCTCCATTTGCCGCTCCTGTGCGAGGACAAGAACGTGCCC
TACGTCTTCGTTCGTTCCAAGCAGGCCTTGGGGCGTGCGTGCGGAGTTTC
CCGGCCAATAGTCGCCTGCTCTGTGACCACCAACGAGGGCAGCCAGCTCA
AGTCGCAGATCACCTCCATTCAGCAGGAGATCGAGCGACTGCTAGTCGCA
AGCTTTCTAGACCAT
BO28714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hoip-RB | 384 | CG3949-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
hoip-RA | 384 | CG3949-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hoip-RB | 607 | CG3949-RB | 145..525 | 17..397 | 1905 | 100 | Plus |
hoip-RA | 569 | CG3949-RA | 107..487 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9699999..9700377 | 19..397 | 1895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:38:03 has no hits.
BO28714.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:26 Download gff for
BO28714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hoip-RA | 145..525 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:05 Download gff for
BO28714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hoip-RA | 107..487 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:15 Download gff for
BO28714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hoip-RA | 107..487 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:15 Download gff for
BO28714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9699998..9700377 | 17..399 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:05 Download gff for
BO28714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9699998..9700377 | 17..399 | 99 | | Plus |
BO28714.pep Sequence
Translation from 16 to 415
> BO28714.pep
MTEEVNPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLA
DIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVA
CSVTTNEGSQLKSQITSIQQEIERLLVASFLDH
BO28714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hoip-PB | 127 | CG3949-PB | 1..127 | 1..127 | 631 | 100 | Plus |
hoip-PA | 127 | CG3949-PA | 1..127 | 1..127 | 631 | 100 | Plus |
NHP2-PB | 160 | CG5258-PB | 37..156 | 5..125 | 194 | 35.2 | Plus |
NHP2-PA | 160 | CG5258-PA | 37..156 | 5..125 | 194 | 35.2 | Plus |