BO28716.complete Sequence
1885 bp assembled on 2011-10-14
GenBank Submission: KX795950
> BO28716.complete
GAAGTTATCAGTCGACATGACCGAGAAGGATACCGTCTCGATGGCTACCG
TGCAAATGAAGCCCGACTATGCGGCTAGCGAGGTCTACAGCACCGCCAGC
GAACCGCCACCGATGGGATTTTTTAACTTTAATCATCAGGCCTACAAGCG
CCAGGCGAATTCGGTGAAAATCGCCAAGATCACCGCCTTCACCATCATCG
TGTCAGCCTTCATCCTGGGATCCTTCATCCTGGCCTCCTCCTACCTGCAG
GCCAAGGCCTCGTGCGATCAGGTCCAGGCCCTCGACTCGGTGCTGGAAAA
GGAGCTAATGCTTGAGACTTTGCAGCAGGTGGGCAAGGAACTTCCCCGTG
CTGAACCCCTGCTGGGAGGAGCTGCTGGAGCTGCCGATGACTCCGAACTG
CAGAGCTTGGAGCCGGAAAGTCGTAAGACTGAAGCCACCCAGGATGCCGA
GGAGCACCCCGACAAGGACAACTCCTACTCCGACAGCGATGAGACCGATG
AGCTGCAGAAGTTCCCCGGCAAGATGCCACTCGAGCTGGACTTGAGTGAC
CTGGCTGCCGCCATTCTGCGCAACAACAAGAAATCCCGCATGAACTGTGT
GGTGGAGCGCAAGCACGCCGAGGAGATTGTCGACTCGCCCTCGAAGACGG
TAGCCCTGCCCTTCGGAGTCAACCTGACCACGGATCCCAAGAAGGCACGC
ATCACCGGCGAGCGGATCTCGATCTTCTGCGACGGCGGCGACGACAAGGA
TAAGGAGGAGAAGGAGGCCAAGCGCCAGCGGGAGCAGGAGGAGGAGGACT
CCGATGAGGATGCCGAGCCGCTGAGGCCCATGTTCATTCCCTTCCAGCGA
GTGCCCATTCCCTTCGGACGCATTCCCGACCAGATGCCGCTGACCCATAT
GCCCCAGAGGATGATGCCACCAGCCATGCAGATGCAACAGCAATTGCCCC
AGCAGCAACAGCAGGGACCCATCATCATCCGCCAGCTGCCACCTCCGTTC
CAGCACCTGCCCATGCGTCCTCCCATGCCGCCACAGGTGATGCAGGCGCC
TCGCATGGAGTCCTCCGAGGAAATGCAGATGCCCAAGGTCCAGACCGTGC
GCATTCACATGCAGCAGATCCCCTTCCGTGAGATCCATGTGGCCGACGAT
GTGCCCGTCCAGATCCCCGCCCAGCAGCAACGTCTGGAGATGCAGCAACG
TCAGGAGATGCAACAGCGCCAGGAGATGCAGCAGCGCCATGAGATGCAGC
AGCGCCAGGAGATGCAGCAGCGTCATGAGATGCAGCAGCGCCAGGAGCAG
CGTGAGATCCCCCAGATTCAGATCCAGCCCATGCCCTTCGGAATGGCCCT
GCAGCGCGTTGGCATCACCGCCGAGGATCTGAGGAACATCCAGCGCATGG
CCGAGGATCGCATCACCGACGAGCTGCGTCGTCTGGCCGCCGAGGAGGGT
GCGGAATCCAGTGAGGGCAGCGACGAAGATGTCTCCAGCTCCGCCGAGCA
GGCCACCACCGAGGCACAGACCACGGTGCCCCAGCAGCAGCAGCAACAGA
CCGTCCAGCCTGAGCAACAGCATCCAGAGGAACAGCACCAGGAAGTCAGC
CAGGAGCGACAGGAGCAGCAGCAGCAGCAGGTGCCCCAGATGCGCATTCA
GCGTTTGATCCTGCAGCCCCTGCCTGAGCAGCCCCGTGACACCATGACCC
CGCCGATGCCCGACCAGCCGCAGCAGCTGCCCTTCGGCCGCATGGTCTAC
GGACGCAGTCTCGCTCAGCCCGTCCGCATCCCGGTGCCCATGATGCAGGC
CATGGAGGGAGGAGCTGCTGCCCCCGAAGAGTCCCAGCGACCACACTTCG
TCCAGCCTCGTTCCGTTGCAAGCTTTCTAGACCAT
BO28716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RA | 1854 | CG10596-PA | 1..1851 | 17..1867 | 9255 | 100 | Plus |
| Msr-110-RC | 1878 | CG10596-PC | 115..1875 | 107..1867 | 8790 | 99.9 | Plus |
| Msr-110-RB | 1827 | CG10596-PB | 96..1824 | 139..1867 | 8645 | 100 | Plus |
| Msr-110-RA | 1854 | CG10596-PA | 1206..1281 | 1186..1261 | 305 | 93.4 | Plus |
| Msr-110-RC | 1878 | CG10596-PC | 1230..1305 | 1186..1261 | 305 | 93.4 | Plus |
| Msr-110-RA | 1854 | CG10596-PA | 1212..1281 | 1174..1243 | 200 | 85.7 | Plus |
| Msr-110-RC | 1878 | CG10596-PC | 1236..1305 | 1174..1243 | 200 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RA | 2722 | CG10596-RA | 207..2057 | 17..1867 | 9255 | 100 | Plus |
| Msr-110-RC | 2600 | CG10596-RC | 175..1935 | 107..1867 | 8790 | 99.9 | Plus |
| Msr-110-RB | 2695 | CG10596-RB | 302..2030 | 139..1867 | 8645 | 100 | Plus |
| Msr-110-RA | 2722 | CG10596-RA | 1412..1487 | 1186..1261 | 305 | 93.4 | Plus |
| Msr-110-RC | 2600 | CG10596-RC | 1290..1365 | 1186..1261 | 305 | 93.4 | Plus |
| Msr-110-RA | 2722 | CG10596-RA | 1418..1487 | 1174..1243 | 200 | 85.7 | Plus |
| Msr-110-RC | 2600 | CG10596-RC | 1296..1365 | 1174..1243 | 200 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5567732..5568996 | 1847..583 | 6325 | 100 | Minus |
| 3L | 28110227 | 3L | 5569117..5569363 | 582..336 | 1235 | 100 | Minus |
| 3L | 28110227 | 3L | 5573631..5573831 | 338..138 | 1005 | 100 | Minus |
| 3L | 28110227 | 3L | 5576838..5576933 | 112..17 | 480 | 100 | Minus |
| 3L | 28110227 | 3L | 5568282..5568357 | 1261..1186 | 305 | 93.4 | Minus |
| 3L | 28110227 | 3L | 5568282..5568351 | 1243..1174 | 200 | 85.7 | Minus |
Blast to na_te.dros performed 2014-11-26 21:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6854 | 1171..1301 | 267 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6924 | 1516..1728 | 262 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6856 | 1528..1639 | 237 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6996 | 1528..1725 | 226 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6878 | 1528..1643 | 214 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2914 | 1172..1296 | 213 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2508 | 1528..1730 | 193 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 1532..1629 | 192 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2280..2449 | 1455..1638 | 184 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2844..2970 | 1172..1301 | 183 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6957 | 1532..1635 | 166 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2880 | 1172..1643 | 157 | 52.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6924 | 1528..1632 | 157 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2511 | 1528..1634 | 146 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6857 | 928..1007 | 138 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6821 | 928..992 | 135 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1163 | 1502..1616 | 133 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2549 | 1532..1620 | 129 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6818 | 928..1010 | 126 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6893 | 918..1007 | 126 | 63.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1151 | 915..1007 | 124 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2415 | 918..1010 | 119 | 63.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3283..3347 | 927..991 | 117 | 68.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1141 | 919..964 | 115 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1587 | 1532..1586 | 113 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6922 | 918..964 | 113 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1129 | 928..964 | 113 | 78.4 | Plus |
BO28716.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:07 Download gff for
BO28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 207..2057 | 17..1869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:51 Download gff for
BO28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 207..2057 | 17..1869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:43 Download gff for
BO28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 207..2057 | 17..1869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:43 Download gff for
BO28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5567732..5568996 | 583..1847 | 100 | <- | Minus |
| 3L | 5569117..5569361 | 338..582 | 100 | <- | Minus |
| 3L | 5573632..5573829 | 140..337 | 100 | <- | Minus |
| 3L | 5574940..5574966 | 113..139 | 100 | <- | Minus |
| 3L | 5576838..5576933 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:51 Download gff for
BO28716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5560832..5562096 | 583..1847 | 100 | <- | Minus |
| arm_3L | 5562217..5562461 | 338..582 | 100 | <- | Minus |
| arm_3L | 5566732..5566929 | 140..337 | 100 | <- | Minus |
| arm_3L | 5568040..5568066 | 113..139 | 100 | <- | Minus |
| arm_3L | 5569938..5570033 | 17..112 | 100 | | Minus |
BO28716.pep Sequence
Translation from 16 to 1885
> BO28716.pep
MTEKDTVSMATVQMKPDYAASEVYSTASEPPPMGFFNFNHQAYKRQANSV
KIAKITAFTIIVSAFILGSFILASSYLQAKASCDQVQALDSVLEKELMLE
TLQQVGKELPRAEPLLGGAAGAADDSELQSLEPESRKTEATQDAEEHPDK
DNSYSDSDETDELQKFPGKMPLELDLSDLAAAILRNNKKSRMNCVVERKH
AEEIVDSPSKTVALPFGVNLTTDPKKARITGERISIFCDGGDDKDKEEKE
AKRQREQEEEDSDEDAEPLRPMFIPFQRVPIPFGRIPDQMPLTHMPQRMM
PPAMQMQQQLPQQQQQGPIIIRQLPPPFQHLPMRPPMPPQVMQAPRMESS
EEMQMPKVQTVRIHMQQIPFREIHVADDVPVQIPAQQQRLEMQQRQEMQQ
RQEMQQRHEMQQRQEMQQRHEMQQRQEQREIPQIQIQPMPFGMALQRVGI
TAEDLRNIQRMAEDRITDELRRLAAEEGAESSEGSDEDVSSSAEQATTEA
QTTVPQQQQQQTVQPEQQHPEEQHQEVSQERQEQQQQQVPQMRIQRLILQ
PLPEQPRDTMTPPMPDQPQQLPFGRMVYGRSLAQPVRIPVPMMQAMEGGA
AAPEESQRPHFVQPRSVASFLDH
BO28716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-PA | 617 | CG10596-PA | 1..617 | 1..617 | 3165 | 100 | Plus |
| Msr-110-PB | 608 | CG10596-PB | 1..608 | 1..617 | 3091 | 98.5 | Plus |
| Msr-110-PD | 605 | CG10596-PD | 1..605 | 1..617 | 3062 | 98.1 | Plus |
| Msr-110-PC | 625 | CG10596-PC | 3..625 | 1..617 | 3013 | 95.3 | Plus |
| CG44085-PH | 756 | CG44085-PH | 273..616 | 257..617 | 245 | 25 | Plus |
