BO28718.complete Sequence
1894 bp assembled on 2011-09-19
GenBank Submission: KX795064
> BO28718.complete
GAAGTTATCAGTCGACATGTCGCTGGGCAAGAAGCACGTGTTGGGATTTT
CGCCCAATGGTGGCCAACTATTTGCCTCGGTGGACGAGTCGGGAGTTCTG
CGGATATGGAACACAGAGACGAACACGCTGTATCAGGAGTTTACGCCCAA
TCTACAGTTATCCGGGTCGTGCACAGCTCTCACGTGGGTTTTGGTGGCCG
GTTCCCGGCCCAAGAAGTCGCGGAAGAGCCTCCAGGCACAGGATGCAGCC
GGTGATCAGCTTCACATTGCTCTGGGAACGTACAAGGGCTCAGTGGTTAT
ATACTCATTAGCCGAGGGAAAGATTTCTCGAACGCTCAGTGGCGACAGCC
ATGATGGACCAGTGACCTCAATTACAAATGACAACGCTGGCCACCTATAC
ACTGTGGGTGCCGATTGTAGGGTTGTTGTTTGGTCCTTGACGGACGAGCG
CTCCATCGCCGAATGGCAAGTGGGACCCGAGAAGCCCCAAAATATAGTCT
ACCTTCAGAAAAGTGGCACCTTGGCCATTGGCTACCGACAGCTGAAGGTG
TACGATATCAAGACAAAGGAGCTGGTGGAAACGTTCACCGGCCACTCGGG
CGAAATAAACACAATCAGCAGCGTGGCGAGCACAGATGGCACTGAATTCG
TTTTGACCACCGCGAAGATGGAGCGCGTAATCTGCTTCTGGAAGATCGAC
AAGAAGGGCAAGAACAAAGCCTCCGCCTGCACGCTCCTCATGGAGGACTT
GGCCTACTGTCTAACCAGCGAAGTGCGCGACGATGGTCAGCTACGTGTGG
CCAGTGTTACCCGCAATGGCATCATACACATTTACCTGTTGAATGTGAAC
AGTTTATCCGCAGAGAAGTTTGTGAAGCCCAAGGTTTCGCTGCAGATCGT
TTCCGATGGCGCCGAAACAGTGGAACCACTTCTAGCCGTGGCGGCCCACT
TTGTGACAGACTCAAATCGCTCCCACGAAATCCTCTTTGGCTACGGAAGT
CGCCAACAGCTGCAGTTTGAACGTTTTACGCCCAACTATGGCGAGAAACT
AAACGTTATTGTGCGCGCCGATCCCAAAAAGCTCTATGCGAAAAAGAAGG
GAAAGGAGCAGCCGGGCTACCAGGCCGCCACCAAGGTCCAGAAGCCCATT
GTAAACCAAAAAAATGTGGAGTACAACAGCGCCCTGCCCATCTCGCAGAA
GAAAGTGCAAAACGAAGTGCCCATGGAAGCCCGACTAGAACATCTTAAAA
TTCAAGGAACCAAACTGAGTGGCGGCAAGTTGTTGACGCAGAGCAAAACG
CAGCTGCTAATGCAGGCATTACACAGCAAGGATCAGGCGATGATACAAGC
CGTTCTGAGCACTCAGGATCCAGAGACGATACAGTTGACCTTGGATCGGC
TACCGCTCGATTATGTCAATCCCCTGGTCAACGAACTTTCCATCCTGCTG
CAAGGAAAGCACGCGAGTGTCCGCTCCGCCCTGCGTTGGCTGCACGCACT
GACCTCCACCCACACTAGTGTCTTGATGTCCGAGGACAAGGAGGCTTTGC
GCGAAAAACTAGCCGTTTGCCTCGGCGTGGCGGAGCAGCGCATGCACTGT
CTATCGGAAGCTTTGCAAATAACCGGGCGAGTCAACCTGATAATTAACCA
GATGAAACGCAACGCGGACAATCATCTCAACGATAACAAAGCCCTGATCC
TGGACGAAGATCCAGATGAGCCCGATCCCGAAGCAGAAACGAACTGGAGC
GATCTGGAGGAGGATCAGCCAGGCAGTCCGAAGAGCCCATTGGAAGACGA
GCTGGTGGCCGACGACGACCTGGCGACCGACGATGGTAACGCCGACGCAG
ACACAGACTCTGACGTATCCATGGATGCAAGCTTTCTAGACCAT
BO28718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30349-RA | 1863 | CG30349-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30349-RA | 2014 | CG30349-RA | 74..1933 | 17..1876 | 9300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8907948..8908479 | 321..852 | 2660 | 100 | Plus |
| 2R | 25286936 | 2R | 8908531..8909021 | 849..1339 | 2455 | 100 | Plus |
| 2R | 25286936 | 2R | 8907591..8907896 | 17..322 | 1530 | 100 | Plus |
| 2R | 25286936 | 2R | 8910641..8910804 | 1713..1876 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 8909260..8909411 | 1466..1617 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 8909077..8909205 | 1339..1467 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 8910487..8910584 | 1618..1715 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:27:10 has no hits.
BO28718.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:06 Download gff for
BO28718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30349-RA | 72..1931 | 17..1878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:52 Download gff for
BO28718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30349-RA | 74..1933 | 17..1878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:13 Download gff for
BO28718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30349-RA | 74..1933 | 17..1878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:13 Download gff for
BO28718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8907591..8907896 | 17..322 | 100 | -> | Plus |
| 2R | 8907950..8908479 | 323..852 | 100 | -> | Plus |
| 2R | 8908535..8909020 | 853..1338 | 100 | -> | Plus |
| 2R | 8909077..8909205 | 1339..1467 | 100 | -> | Plus |
| 2R | 8909262..8909411 | 1468..1617 | 100 | -> | Plus |
| 2R | 8910487..8910584 | 1618..1715 | 100 | -> | Plus |
| 2R | 8910644..8910804 | 1716..1878 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:52 Download gff for
BO28718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4795096..4795401 | 17..322 | 100 | -> | Plus |
| arm_2R | 4795455..4795984 | 323..852 | 100 | -> | Plus |
| arm_2R | 4796040..4796525 | 853..1338 | 100 | -> | Plus |
| arm_2R | 4796582..4796710 | 1339..1467 | 100 | -> | Plus |
| arm_2R | 4796767..4796916 | 1468..1617 | 100 | -> | Plus |
| arm_2R | 4797992..4798089 | 1618..1715 | 100 | -> | Plus |
| arm_2R | 4798149..4798309 | 1716..1878 | 98 | | Plus |
BO28718.pep Sequence
Translation from 16 to 1894
> BO28718.pep
MSLGKKHVLGFSPNGGQLFASVDESGVLRIWNTETNTLYQEFTPNLQLSG
SCTALTWVLVAGSRPKKSRKSLQAQDAAGDQLHIALGTYKGSVVIYSLAE
GKISRTLSGDSHDGPVTSITNDNAGHLYTVGADCRVVVWSLTDERSIAEW
QVGPEKPQNIVYLQKSGTLAIGYRQLKVYDIKTKELVETFTGHSGEINTI
SSVASTDGTEFVLTTAKMERVICFWKIDKKGKNKASACTLLMEDLAYCLT
SEVRDDGQLRVASVTRNGIIHIYLLNVNSLSAEKFVKPKVSLQIVSDGAE
TVEPLLAVAAHFVTDSNRSHEILFGYGSRQQLQFERFTPNYGEKLNVIVR
ADPKKLYAKKKGKEQPGYQAATKVQKPIVNQKNVEYNSALPISQKKVQNE
VPMEARLEHLKIQGTKLSGGKLLTQSKTQLLMQALHSKDQAMIQAVLSTQ
DPETIQLTLDRLPLDYVNPLVNELSILLQGKHASVRSALRWLHALTSTHT
SVLMSEDKEALREKLAVCLGVAEQRMHCLSEALQITGRVNLIINQMKRNA
DNHLNDNKALILDEDPDEPDPEAETNWSDLEEDQPGSPKSPLEDELVADD
DLATDDGNADADTDSDVSMDASFLDH
BO28718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30349-PA | 620 | CG30349-PA | 1..620 | 1..620 | 3168 | 100 | Plus |
