BO28721.complete Sequence
1480 bp assembled on 2011-08-24
GenBank Submission: KX796249
> BO28721.complete
GAAGTTATCAGTCGACATGTACAAGAACATCGACAATGAGTCCTCCACGA
CCATGTTTGAAATGTACTCCTCCTCGGATAGGTTCATACGTTCGGACATG
GCCGACGTACCCGTGCAGCAGGCGGCAGGATCGACGCTTCCGTTGGTAAT
CTCTCGGAAAAAAGGCGACGACTCCGAGGATGGCAACTACAATCCGTTCG
AGCACCGCAAGGTGGAGCATCCGACATCGGATCTCGAGACATTTGTACAC
TTGCTAAAGGGATCGCTTGGCTCCGGAATATTGGCCATGCCAATGGCCTT
CTCCCACGCTGGATTGTGGTTCGGTTTGGTGGCCACCTTCGCGGTGGGCA
CCTTGTGCACCTACTGCGTCCACATTCTGGTCAAGTGCGCCCACATCCTG
TGCCGACGTCGTAAAATCCCGATGATGGGATTCGCCGATGTGGCGGAACA
GGCTTTCCTCGACGGACCACCTGCCCTGAATCGCTGGTCACGCTTCATCC
GGTTCATGGTCAATACGTTTCTGGTTATCGATTTGCTGGGCTGCTGCTGC
ATCTATCTGGTTTTCGTGGCCACCAATGTGGAGCAGGTCGTGCGGGTGTA
TATGGAAACGGAGCTGAGCATTAGAGTTTGGATCATGATCGTGACGGCAC
CGCTAATCTTTATGTGCCTGGTACGCAACCTGAAGTTCCTCACGCCCTTC
TCGATGATAGCCAACATCCTGATGTTCGTGGGCATCGTGATCACCTTCAT
CTATATGTTCTCCGATATTCCTGCACCCGTGGAACGTCCTGGAATTGTGA
GTGTAACCGAATGGCCATTGTTCTTCGGCACCGTGATCTTTGCTCTGGAG
GGCATCGGTGTAGTTATGTCCCTGGAGAACGACATGAAGAACCCCAGCCA
CTTCATCGGTTGCCCATCTGTCCTGAACTTCGGCATGGGTCTGGTGATTG
CCCTCTACACTCTGGTTGGATTCTTTGGCTTCCTGAAGTACGGCCCGGAA
ACCCAGGCCAGCATTACGCTGAATCTGCCCCTGGAGGATAAGTTGGCCCA
ATCCGTCAAGTTGATGATTGCCATCGCCATCTTCTTCACCTTCACCCTGC
AGTTCTACGTGCCCGTCACGATTTTGTGGAAGGGTCTGGAGCACAAGATC
CGGCCGGAGAAGCAGAACATCAGTGAATACGGACTTCGTGTCTTTCTGGT
GCTTCTGTGCGGCGGAATCGCAGTGGCTCTGCCCAACTTGGGACCTTTCA
TCTCGCTAATTGGAGCGGTGTGCCTGAGTACGCTGGGCATGATCGTTCCG
GCGACCATTGAGCTGGCCGTGTATCATGAGGATCCCGGATACGGGCGCTT
CAATTGGCGGCTGTGGAAGAACTCCGGACTGATACTGTTCGGCGTGGTGG
GTTTCGTGGCCGGAACCTATGTCAGCATCATCGAATTCCACGCCGAATTC
AGCAGCGGTCACGCAAGCTTTCTAGACCAT
BO28721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RC | 1449 | CG43693-PC | 1..1446 | 17..1462 | 7230 | 100 | Plus |
| CG43693-RG | 1719 | CG43693-PG | 336..1716 | 82..1462 | 6905 | 100 | Plus |
| CG43693-RB | 1509 | CG43693-PB | 126..1506 | 82..1462 | 6905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RC | 2163 | CG43693-RC | 92..1537 | 17..1462 | 7230 | 100 | Plus |
| CG43693-RG | 2434 | CG43693-RG | 428..1808 | 82..1462 | 6905 | 100 | Plus |
| CG43693-RB | 2399 | CG43693-RB | 393..1773 | 82..1462 | 6905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11037620..11038434 | 1043..229 | 4075 | 100 | Minus |
| 3L | 28110227 | 3L | 11036984..11037245 | 1462..1201 | 1310 | 100 | Minus |
| 3L | 28110227 | 3L | 11039617..11039829 | 229..17 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 11037396..11037555 | 1201..1042 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:38:54 has no hits.
BO28721.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:28 Download gff for
BO28721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6327-RC | 92..1537 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:38 Download gff for
BO28721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RC | 92..1537 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:39 Download gff for
BO28721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RC | 92..1537 | 17..1464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:39 Download gff for
BO28721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11036981..11037244 | 1202..1464 | 99 | <- | Minus |
| 3L | 11037396..11037555 | 1042..1201 | 100 | <- | Minus |
| 3L | 11037622..11038434 | 229..1041 | 100 | <- | Minus |
| 3L | 11039618..11039829 | 17..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:38 Download gff for
BO28721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11030081..11030344 | 1202..1464 | 99 | <- | Minus |
| arm_3L | 11030496..11030655 | 1042..1201 | 100 | <- | Minus |
| arm_3L | 11030722..11031534 | 229..1041 | 100 | <- | Minus |
| arm_3L | 11032718..11032929 | 17..228 | 100 | | Minus |
BO28721.pep Sequence
Translation from 16 to 1480
> BO28721.pep
MYKNIDNESSTTMFEMYSSSDRFIRSDMADVPVQQAAGSTLPLVISRKKG
DDSEDGNYNPFEHRKVEHPTSDLETFVHLLKGSLGSGILAMPMAFSHAGL
WFGLVATFAVGTLCTYCVHILVKCAHILCRRRKIPMMGFADVAEQAFLDG
PPALNRWSRFIRFMVNTFLVIDLLGCCCIYLVFVATNVEQVVRVYMETEL
SIRVWIMIVTAPLIFMCLVRNLKFLTPFSMIANILMFVGIVITFIYMFSD
IPAPVERPGIVSVTEWPLFFGTVIFALEGIGVVMSLENDMKNPSHFIGCP
SVLNFGMGLVIALYTLVGFFGFLKYGPETQASITLNLPLEDKLAQSVKLM
IAIAIFFTFTLQFYVPVTILWKGLEHKIRPEKQNISEYGLRVFLVLLCGG
IAVALPNLGPFISLIGAVCLSTLGMIVPATIELAVYHEDPGYGRFNWRLW
KNSGLILFGVVGFVAGTYVSIIEFHAEFSSGHASFLDH
BO28721.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-PC | 482 | CG43693-PC | 1..482 | 1..482 | 2514 | 100 | Plus |
| CG43693-PG | 572 | CG43693-PG | 112..572 | 22..482 | 2403 | 99.8 | Plus |
| CG43693-PB | 502 | CG43693-PB | 42..502 | 22..482 | 2403 | 99.8 | Plus |
| CG43693-PA | 502 | CG43693-PA | 42..502 | 22..482 | 2403 | 99.8 | Plus |
| CG43693-PD | 490 | CG43693-PD | 30..490 | 22..482 | 2403 | 99.8 | Plus |
