BO28722.complete Sequence
1804 bp assembled on 2011-09-19
GenBank Submission: KX793762
> BO28722.complete
GAAGTTATCAGTCGACATGGCGACCGAAACTACAAAAATGATCTACACGC
CACCGCCACTGGACATCAAAATGGAAATTGAAATTGGCGAACAACCCCAG
CCTCCGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGT
TGTGTTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAG
GCGCCGAATTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGG
GTTACGGAAGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGC
CTTCCCAATAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACT
TCAAGGATACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCT
GTGGAGTACTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGAT
CGTGGGCTGCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAA
TGTTTTTGAGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGT
CCGATTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAA
AATCAACCATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACA
ACGAGGATGAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTG
GGCATTGCCTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAAC
TGCCACCAATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACT
CCACCGAACAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCC
ATGTTGGTCTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCAT
GGGTCTGTGGCGTCCCAAGAGCAAGGAGGCACAGGAAGTCCAGAGGGGAC
GAGAGGGCGCCGATGTCGCCAAAAAGGTTATCGATCAGCGCTACAAGGAT
CTGGGTCCCATGTCCATTCACGAGATCCAAGTGATGATTCTGTTCATTTT
TATGGTTGTGATGTACTTCACCCGCAAGCCCGGCATCTTTTTGGGATGGG
CCGATTTGCTGAATTCCAAGGACATTCGTAACTCTATGCCCACTATTTTT
GTCGTCGTCATGTGCTTCATGCTGCCCGCCAATTATGCTTTCCTACGCTA
CTGCACCAGACGCGGTGGTCCAGTGCCCACGGGTCCCACTCCATCGCTGA
TCACCTGGAAGTTCATCCAGACCAAGGTGCCATGGGGTCTGGTGTTCCTG
CTTGGCGGTGGCTTCGCTTTGGCCGAAGGCAGCAAGCAGAGCGGCATGGC
CAAGCTGATTGGCAATGCTCTGATTGGATTGAAGGTTCTGCCCAACTCTG
TCCTCTTACTGGTGGTCATCCTGGTGGCTGTGTTCCTGACCGCCTTCAGC
TCCAATGTGGCGATTGCCAACATTATTATTCCCGTTCTGGCCGAGATGTC
CCTGGCCATTGAGATCCATCCTCTGTACCTGATCCTGCCCGCTGGCTTGG
CCTGCAGTATGGCCTTCCACCTGCCGGTTAGTACTCCGCCCAACGCTTTG
GTTGCTGGCTATGCCAACATTAGGACGAAGGACATGGCCATTGCTGGAAT
CGGTCCGACCATCATTACCATCATCACCCTGTTTGTTTTCTGCCAAACCT
GGGGCCTGGTCGTCTATCCGAACCTTAACTCGTTCCCCGAATGGGCTCAG
ATTTATGCCGCGGCAGCACTGGGAAACAAGACGCACGCAAGCTTTCTAGA
CCAT
BO28722.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-RB | 1773 | CG3979-PB | 1..1770 | 17..1786 | 8850 | 100 | Plus |
| Indy-RD | 1719 | CG3979-PD | 1..1716 | 71..1786 | 8580 | 100 | Plus |
| Indy-RA | 1719 | CG3979-PA | 1..1716 | 71..1786 | 8580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-RB | 2572 | CG3979-RB | 208..1978 | 16..1786 | 8855 | 100 | Plus |
| Indy-RC | 2600 | CG3979-RC | 260..2006 | 40..1786 | 8735 | 100 | Plus |
| Indy-RD | 2581 | CG3979-RD | 242..1987 | 41..1786 | 8730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18830275..18830734 | 1120..661 | 2300 | 100 | Minus |
| 3L | 28110227 | 3L | 18829579..18829963 | 1498..1114 | 1910 | 99.7 | Minus |
| 3L | 28110227 | 3L | 18829226..18829514 | 1786..1498 | 1445 | 100 | Minus |
| 3L | 28110227 | 3L | 18830839..18831035 | 661..465 | 970 | 99.5 | Minus |
| 3L | 28110227 | 3L | 18831093..18831242 | 471..322 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 18831494..18831621 | 206..79 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 18831311..18831427 | 322..206 | 585 | 100 | Minus |
| 3L | 28110227 | 3L | 18831947..18831985 | 78..40 | 195 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1564..1616 | 1741..1796 | 120 | 71.4 | Plus |
BO28722.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:05 Download gff for
BO28722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RB | 202..1971 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:40 Download gff for
BO28722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RB | 209..1978 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:59 Download gff for
BO28722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RB | 209..1978 | 17..1788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:59 Download gff for
BO28722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18829224..18829513 | 1499..1788 | 99 | <- | Minus |
| 3L | 18829579..18829957 | 1120..1498 | 100 | <- | Minus |
| 3L | 18830276..18830734 | 661..1119 | 100 | <- | Minus |
| 3L | 18830840..18831028 | 472..660 | 100 | <- | Minus |
| 3L | 18831093..18831241 | 323..471 | 100 | <- | Minus |
| 3L | 18831311..18831427 | 206..322 | 100 | <- | Minus |
| 3L | 18831495..18831621 | 79..205 | 100 | <- | Minus |
| 3L | 18831947..18831984 | 41..78 | 100 | <- | Minus |
| 3L | 18846036..18846059 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:40 Download gff for
BO28722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18822324..18822613 | 1499..1788 | 99 | <- | Minus |
| arm_3L | 18822679..18823057 | 1120..1498 | 100 | <- | Minus |
| arm_3L | 18823376..18823834 | 661..1119 | 100 | <- | Minus |
| arm_3L | 18823940..18824128 | 472..660 | 100 | <- | Minus |
| arm_3L | 18824193..18824341 | 323..471 | 100 | <- | Minus |
| arm_3L | 18824411..18824527 | 206..322 | 100 | <- | Minus |
| arm_3L | 18824595..18824721 | 79..205 | 100 | <- | Minus |
| arm_3L | 18825047..18825084 | 41..78 | 100 | <- | Minus |
| arm_3L | 18839136..18839159 | 17..40 | 100 | | Minus |
BO28722.pep Sequence
Translation from 16 to 1804
> BO28722.pep
MATETTKMIYTPPPLDIKMEIEIGEQPQPPVKCSNFFANHWKGLVVFLVP
LLCLPVMLLNEGAEFRCMYLLLVMAIFWVTEALPLYVTSMIPIVAFPIMG
IMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLHKRLALRVIQIVGCSP
RRLHFGLIMVTMFLSMWISNAACTAMMCPIIQAVLEELQAQGVCKINHEP
QYQIVGGNKKNNEDEPPYPTKITLCYYLGIAYASSLGGCGTIIGTATNLT
FKGIYEARFKNSTEQMDFPTFMFYSVPSMLVYTLLTFVFLQWHFMGLWRP
KSKEAQEVQRGREGADVAKKVIDQRYKDLGPMSIHEIQVMILFIFMVVMY
FTRKPGIFLGWADLLNSKDIRNSMPTIFVVVMCFMLPANYAFLRYCTRRG
GPVPTGPTPSLITWKFIQTKVPWGLVFLLGGGFALAEGSKQSGMAKLIGN
ALIGLKVLPNSVLLLVVILVAVFLTAFSSNVAIANIIIPVLAEMSLAIEI
HPLYLILPAGLACSMAFHLPVSTPPNALVAGYANIRTKDMAIAGIGPTII
TIITLFVFCQTWGLVVYPNLNSFPEWAQIYAAAALGNKTHASFLDH
BO28722.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-PB | 590 | CG3979-PB | 1..590 | 1..590 | 3089 | 100 | Plus |
| Indy-PD | 572 | CG3979-PD | 1..572 | 19..590 | 2994 | 100 | Plus |
| Indy-PA | 572 | CG3979-PA | 1..572 | 19..590 | 2994 | 100 | Plus |
| Indy-PC | 572 | CG3979-PC | 1..572 | 19..590 | 2994 | 100 | Plus |
| CG33934-PE | 556 | CG33934-PE | 16..555 | 32..577 | 1531 | 51.3 | Plus |
