BO28725.complete Sequence
2044 bp assembled on 2011-09-19
GenBank Submission: KX797246
> BO28725.complete
GAAGTTATCAGTCGACATGTCGCGGCACAGGATAGTGCGCACCATGGACT
ACAATGATGAGTACGACGGCTACGACGACATCTACGGGCACTCCGTGGAG
GACGAGCACTGCATCTCGCCCACGGATGCCCAGCAATGGCTCTACGATCG
GGCTCGTGGCCAGCAGAGCATCTCGGCGTTCATCAGCAAGAACAAGGACA
TCCAAGAGGAGGAGGCCGACGAGGATGAGGACGAGGACGCCGCCTTCGCC
AAGGCTCGCCGCGACTCCGAGAGCTTCCAAATGCCGCAACTGGACGAGAT
CGAGCAGGCCAAGCTGAGCTCCTGCGTGGACGAGGTGCGCAGCGTGGTGG
GCGATGCCGTCTCCGAGCGCCGCATCGTGGAGACATCCATGAAATTCGAC
TATGACATGCAGAAGATCCTGGACGAGATCCTCAACGAAGAGACCAACAA
GTCTGCCAAGCCGGCTGTGAATAAGATGAAAGCGCCCGCTGCTCCAGTGC
TGCCAAAGACGGTCAGCAAAACGGTGCCTACGCCACCACCCAAGATCAGC
CTTAAAGAGCCGCGACGTGGCTTCGAAATACCCTCGCCCAAGGTGCCCTC
ATCGCCTGTGGTCTCGGGCAGAAACACACCCGTTGACATTAGCGCCGGCG
ACGACATCTCCCGTAGCTCAGCAACCGTTTTCAAGGTCTCCAAGGAACAG
GCCGTGCGCAATGCCCGCCAGCTGTACGAGAAGGAGCGAGCCGACCAGAA
GAGCCACATTCACATGATTGTCATTGGTCACGTCGACGCCGGGAAGAGTA
CGCTGATGGGCCATCTACTGTACGACACCGGCAACGTTTCGCAGCGAGTG
ATGCACAAGCACGAGCAGGAGTCCAAGAAGCTGGGCAAGCAGAGCTTCAT
GTATGCCTGGGTGCTGGACGAGACGGGCGAGGAGCGGGCCCGCGGCATCA
CCATGGACGTGGGCCAGTCGCGTATCGAAACCAAGACCAAGATCGTCACA
CTGCTGGATGCTCCGGGGCACAAGGACTTCATTCCGAACATGATCTCCGG
TGCCACACAGGCGGATGTTGCCCTTCTGGTGGTGGATGCTACAAGGGGAG
AGTTTGAATCCGGCTTTGAGCTCGGCGGACAGACTAGAGAGCACGCCATT
CTAGTGCGATCCCTGGGGGTTAACCAGCTAGGCGTGGTCATCAACAAGCT
GGACACCGTTGGCTGGTCCCAGGACCGATTCACAGAGATTGTGACCAAGC
TAAAGTCCTTCCTCAAACTGGCGGGCTTCAAGGATTCCGATGTGAGTTTT
ACGCCCTGTTCCGGACTAACCGGCGAGAACCTCACCAAGAAAGCCCAGGA
ACCCGCCCTGACCAACTGGTACAGTGGACGCCACCTCCTCGATGTCATTG
AGAACTTCAAGATCCCCGAAAGAGCCATCGACAGACCGCTGCGAATGTCC
GTGTCGGACATTTACAAGGGCACTGGCTCCGGATTCTGCATCTCGGGACG
AGTGGAAACCGGAGTGCTGTGCCTGAACGACAAGGTGCTGGTGGGTGCCA
GCCGGGAGCAGGCCCAAGTGAAATCCCTTACCATGAACGAATTCCCACAG
ACTTGCGTGTTCGCCGGCGATCAGGTCTCCGTCACCCTGCCCGCCTTGGA
CATCAACAACGTCACCGTGGGCTGCATCATCAGCGATCCACAAACCCCTA
TTCCGGTGACAACGCGATTCCAGGCCCGCATAATCGTGTTCAACGTCAAG
GTGCCCATTACCATGGGCTTCCCCGTGCTGCTGCACCACCAATCCCTAAT
AGAGCCCGCCGTGGTCTGCAAGCTGACCGCATCGATTCACAAGAGCACCG
GCGAGGTGGTCAAGAAGAAGCCGCGTTGCCTGGGCAACAACTCGTGTGCC
CTAGTGGAACTGGAAACCAGCAGACCCATCTGCATCGAGCGGTATGCGGA
CTTCAAGGAGCTGGGACGCGTGATGCTTCGCGTGGCGGGAGTCACCATTG
CCGCCGGAATGGTCACCAAGATCCGCGCAAGCTTTCTAGACCAT
BO28725.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HBS1-RB | 2013 | CG1898-PB | 1..2010 | 17..2026 | 10050 | 100 | Plus |
| HBS1-RA | 2013 | CG1898-PA | 1..2010 | 17..2026 | 10050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HBS1-RB | 2360 | CG1898-RB | 196..2205 | 17..2026 | 10050 | 100 | Plus |
| HBS1-RA | 2259 | CG1898-RA | 95..2104 | 17..2026 | 10050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1863036..1865045 | 2026..17 | 10050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:27:57 has no hits.
BO28725.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:07 Download gff for
BO28725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HBS1-RA | 265..2274 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:02 Download gff for
BO28725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HBS1-RA | 95..2104 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:37 Download gff for
BO28725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HBS1-RA | 95..2104 | 17..2028 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:37 Download gff for
BO28725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1863034..1865045 | 17..2028 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:02 Download gff for
BO28725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1863034..1865045 | 17..2028 | 99 | | Minus |
BO28725.pep Sequence
Translation from 16 to 2044
> BO28725.pep
MSRHRIVRTMDYNDEYDGYDDIYGHSVEDEHCISPTDAQQWLYDRARGQQ
SISAFISKNKDIQEEEADEDEDEDAAFAKARRDSESFQMPQLDEIEQAKL
SSCVDEVRSVVGDAVSERRIVETSMKFDYDMQKILDEILNEETNKSAKPA
VNKMKAPAAPVLPKTVSKTVPTPPPKISLKEPRRGFEIPSPKVPSSPVVS
GRNTPVDISAGDDISRSSATVFKVSKEQAVRNARQLYEKERADQKSHIHM
IVIGHVDAGKSTLMGHLLYDTGNVSQRVMHKHEQESKKLGKQSFMYAWVL
DETGEERARGITMDVGQSRIETKTKIVTLLDAPGHKDFIPNMISGATQAD
VALLVVDATRGEFESGFELGGQTREHAILVRSLGVNQLGVVINKLDTVGW
SQDRFTEIVTKLKSFLKLAGFKDSDVSFTPCSGLTGENLTKKAQEPALTN
WYSGRHLLDVIENFKIPERAIDRPLRMSVSDIYKGTGSGFCISGRVETGV
LCLNDKVLVGASREQAQVKSLTMNEFPQTCVFAGDQVSVTLPALDINNVT
VGCIISDPQTPIPVTTRFQARIIVFNVKVPITMGFPVLLHHQSLIEPAVV
CKLTASIHKSTGEVVKKKPRCLGNNSCALVELETSRPICIERYADFKELG
RVMLRVAGVTIAAGMVTKIRASFLDH
BO28725.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HBS1-PB | 670 | CG1898-PB | 1..670 | 1..670 | 3431 | 100 | Plus |
| HBS1-PA | 670 | CG1898-PA | 1..670 | 1..670 | 3431 | 100 | Plus |
| Elf-PB | 619 | CG6382-PB | 85..617 | 149..669 | 806 | 34.6 | Plus |
| Elf-PD | 619 | CG6382-PD | 85..617 | 149..669 | 806 | 34.6 | Plus |
| Elf-PA | 619 | CG6382-PA | 85..617 | 149..669 | 806 | 34.6 | Plus |
