BO28727.complete Sequence
3376 bp assembled on 2013-09-16
GenBank Submission: KX795503
> BO28727.complete
GAAGTTATCAGTCGACATGATGCGTCACTCCAGTTTGCGCCTTATAATTG
GCGGCCTGATACTCCTCCTCTTTGTGCTTAATGTCTTCAGCAAGGAACAG
GGATCTCATTCCCACAAACGCAGCCATTCGGCGAAGAGATTCTCGCGGGA
CTCCAACTCCGCACGTGAGCGACGCCCAAACATAATCCTCATTCTGACCG
ATGACCAGGATGTGGAGCTGGGCTCCCTTAACTTCATGCCGCGCACGTTG
CGACTTCTTAGAGATGGAGGAGCCGAATTCCGACATGCCTATACCACCAC
ACCCATGTGCTGTCCGGCGAGATCGTCTCTGCTGACTGGGATGTACGTCC
ACAACCACATGGTGTTTACCAACAATGACAACTGCTCCAGCCCACAGTGG
CAGGCCACTCATGAGACGCGATCCTATGCCACATACCTCTCGAATGCAGG
CTATCGCACCGGCTATTTCGGAAAGTATCTAAACAAGTACAATGGATCCT
ATATCCCACCAGGTTGGCGGGAGTGGGGAGGATTGATCATGAACTCCAAG
TACTACAACTACAGCATCAACCTGAATGGACAAAAAATTAAGCACGGTTT
TGACTACGCTAAAGACTACTATCCGGATCTGATAGCCAATGACTCGATTG
CCTTCCTCCGCTCCTCAAAGCAACAGAACCAGCGGAAGCCAGTGCTGCTC
ACCATGAGTTTTCCTGCACCACATGGCCCTGAGGATTCGGCTCCCCAGTA
TAGTCATCTCTTCTTTAATGTGACAACCCATCACACTCCATCGTATGATC
ACGCCCCAAATCCGGACAAGCAATGGATCCTGAGGGTCACGGAACCCATG
CAGCCTGTTCACAAAAGGTTCACCAATCTGCTCATGACGAAGCGACTGCA
AACGCTCCAAAGTGTCGACGTTGCCGTGGAGCGGGTTTATAACGAGCTAA
AAGAACTCGGAGAGCTGGACAACACTTATATAGTATACACTTCCGATCAT
GGTTATCATCTGGGTCAGTTTGGACTTATTAAAGGAAAAAGTTTTCCCTT
TGAGTTTGATGTCCGTGTGCCGTTCCTTATCCGTGGTCCAGGGATTCAGG
CATCTAAGGTGGTCAATGAGATTGTTTTAAATGTGGACCTGGCCCCCACT
TTCCTGGATATGGGTGGTGTGCCAACGCCTCAGCATATGGATGGGCGCAG
CATACTGCCACTGCTTCTGAGCAGAAATCGCGCTGTGCGAGACAACTGGC
CAGATAGCTTCCTCATTGAGAGTTCCGGCAGGAGGGAGACAGCTGAGCAG
ATAGCCGAATCTCGTGCCCGCCTTCAAATTGAAAGGCGAAACATGAAACT
GGCCAACAGTTCGCTGCTTGAAGATTTCCTTGAAGGAGCAGGCGAAAGTA
CCACCATTGTTTCGAGCAGCAGCACCGCTGCCACATTGATGAGCTCAACC
GCTCAGCAGCCGGAGGATGGGGAAGAGGAAGTGGAAACGGACAACGAAGA
GGATGATGTAGACGGTGATGGTGCCATGGACAGCTCAGCAGCAGCTCTGG
AAGAAGATGACCTCGACGATGCCGCCTTCGAGGAGGGTGATGAAGAGCTT
GATCAGGAGTTTCAACAAAACAACGATCTTCCACTGGCTCCTTATATAAC
CAAGATGATGCGCCTTAACTCGGAGTGCTCTGACCCGGCGCTACTCAAAA
ACTGTCTACCTGGGCAAAAATGGAAGTGCGTCAATGAGGAGGGACGTTGG
CGGAAGCACAAGTGCAAATTCCATCTTCAGTTAGAGCATCAGTTGGCTGC
GATGCCCCGGAAGCAATATCAACGTAATTGTGCCTGTTTCACTCCCGACG
GAGTAGTCTATACCAAGATTCGAGCCCCATCTGCTGGATTGCATCGCGTT
AACAAGCGCACACATAACGGCCCAGGAAGGCGTCGAAACAAGCGGGAGGT
GTTCCATACTGAGTTACCTGACGAGATGGAGGAGCTGTTAGATCTCCACC
AGGTGGTAGATCAACTTGTTGATCATACGCATCGCAGCAAGCGTGATTTG
CCCGCAAGCAGCAATGAGACTATTGCCCAGGTCATTCAGCAGATACAAAG
CACCCTGGAGATCTTGGAGCTTAAATTCAACGAGCACGAGCTACACGCAT
CCAACTCTAGTGGCAACTCATATGAGCGGGGAGAAAAGTACACAAAATCT
GGTGGCCATCGGTGCTTCGTGGATGCGACCACGGCTAAAGTGAACTGCTC
AAATGTGATATACGACGACGAAAAGACGTGGCGTACTTCGCGTACTCAAA
TTGATATGCTGATCAAGCTTCTAAAGGACAAGATTGGCAAGCTGAAGGAG
ATGAAGAAGCAGTTGAGGGAAAGCAATAAACAGGCCTTGGCCGCTGGTAG
AAGAAATGATAACCGACGGCGTAATGATCAAAGTGTGCTGGATAGTGGAG
CCGGACCAGAGTTTAACATGAGCTACTTTACTGAGATCAGCAGCACGCCA
AGATCAAACGTCGTAGGTCAAACGGAAGTATTCCAAGGATATGGAAGTGC
AAGCGCATTCGATTCATTGGAGCAAACGCAGTCGCATCGGTTTACACCGC
GAGCAGAATGCTATTGCGAACCAGATGTAGGCGAGAACCATGCAGACTCT
AAGGAAATGGCGCGTGAGGCACGACGAAAGCTTAAAGAGGAGCGACAGCG
CAAGAAGGAACGGAAGCGCATTAAGAAGGCTCGTCTGGAAAAGGAGTGTC
TGTCCGAGAAGATGAACTGCTTCTCGCACGACAATCAGCACTGGCGAACG
GCTCCCCTTTGGAACGACAGTCCATTTTGCTTCTGTATGAACGCCAATAA
TAACACCTACTCCTGCCTAAGGACCATCAATGGCACCCACAACTTTTTGT
ACTGCGAGTTTACCACAGGCCTTATCACCTTCTATAACCTGACCATTGAT
CGCTTTGAAACGATAAACCGTGCAGCGGGTCTGACGCCTGGAGAGAGATC
CCACATGCACGATGCTTTAGATCAGTTGAAGAGCTGTCGAGGACGCAGTT
GCAGCATCCGGCGACACCAGAATCACCTGGAGGGCGGATCTAGTGCTCCA
CTGCTGCCCATCAATCAAGTGCACCGCAACAACAAACGAAAGCACTCTCC
TCTCGCGGGCGCAGTTGGCAACTATGCATTCGTAGGCCCACGACTGGATA
TGGAAGCACTGCCTCCGATTAAGCGGCGTAAGCTGTCCAAATACAACAGA
TTGACTGGCTCGCAGCAGTCGCATATGAAGCGGCGTCCCTGGAAGCAGAC
GCCCCTTCAGCAGTCCCCCAGATTCTTGCGCACGCATTCTGTGACACCAG
CCCAGGCCGCAAGCTTTCTAGACCAT
BO28727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sulf1-RC | 3345 | CG6725-PC | 1..3342 | 17..3358 | 16710 | 100 | Plus |
| Sulf1-RB | 3345 | CG6725-PB | 1..3342 | 17..3358 | 16710 | 100 | Plus |
| Sulf1-RA | 3345 | CG6725-PA | 1..3342 | 17..3358 | 16710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sulf1-RC | 4401 | CG6725-RC | 418..3759 | 17..3358 | 16710 | 100 | Plus |
| Sulf1-RB | 5042 | CG6725-RB | 1059..4400 | 17..3358 | 16710 | 100 | Plus |
| Sulf1-RA | 4835 | CG6725-RA | 852..4193 | 17..3358 | 16710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16312173..16313035 | 2637..1775 | 4315 | 100 | Minus |
| 3R | 32079331 | 3R | 16314365..16315131 | 783..17 | 3835 | 100 | Minus |
| 3R | 32079331 | 3R | 16313106..16313769 | 1774..1111 | 3320 | 100 | Minus |
| 3R | 32079331 | 3R | 16313823..16314150 | 1111..784 | 1640 | 100 | Minus |
| 3R | 32079331 | 3R | 16311801..16312111 | 2948..2638 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 16311527..16311725 | 3146..2948 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 16311184..16311294 | 3358..3248 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 16311361..16311463 | 3249..3147 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:05:41 has no hits.
BO28727.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:50 Download gff for
BO28727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sulf1-RA | 852..4193 | 17..3360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:07 Download gff for
BO28727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sulf1-RA | 852..4193 | 17..3360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:07 Download gff for
BO28727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16311182..16311292 | 3250..3360 | 98 | <- | Minus |
| 3R | 16311361..16311463 | 3147..3249 | 100 | <- | Minus |
| 3R | 16311527..16311724 | 2949..3146 | 100 | <- | Minus |
| 3R | 16311801..16312111 | 2638..2948 | 100 | <- | Minus |
| 3R | 16312173..16313035 | 1775..2637 | 100 | <- | Minus |
| 3R | 16313106..16313769 | 1111..1774 | 100 | <- | Minus |
| 3R | 16313824..16314150 | 784..1110 | 100 | <- | Minus |
| 3R | 16314365..16315131 | 17..783 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:50 Download gff for
BO28727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12136904..12137014 | 3250..3360 | 98 | <- | Minus |
| arm_3R | 12137083..12137185 | 3147..3249 | 100 | <- | Minus |
| arm_3R | 12137249..12137446 | 2949..3146 | 100 | <- | Minus |
| arm_3R | 12137523..12137833 | 2638..2948 | 100 | <- | Minus |
| arm_3R | 12137895..12138757 | 1775..2637 | 100 | <- | Minus |
| arm_3R | 12138828..12139491 | 1111..1774 | 100 | <- | Minus |
| arm_3R | 12139546..12139872 | 784..1110 | 100 | <- | Minus |
| arm_3R | 12140087..12140853 | 17..783 | 100 | | Minus |
BO28727.pep Sequence
Translation from 16 to 3376
> BO28727.pep
MMRHSSLRLIIGGLILLLFVLNVFSKEQGSHSHKRSHSAKRFSRDSNSAR
ERRPNIILILTDDQDVELGSLNFMPRTLRLLRDGGAEFRHAYTTTPMCCP
ARSSLLTGMYVHNHMVFTNNDNCSSPQWQATHETRSYATYLSNAGYRTGY
FGKYLNKYNGSYIPPGWREWGGLIMNSKYYNYSINLNGQKIKHGFDYAKD
YYPDLIANDSIAFLRSSKQQNQRKPVLLTMSFPAPHGPEDSAPQYSHLFF
NVTTHHTPSYDHAPNPDKQWILRVTEPMQPVHKRFTNLLMTKRLQTLQSV
DVAVERVYNELKELGELDNTYIVYTSDHGYHLGQFGLIKGKSFPFEFDVR
VPFLIRGPGIQASKVVNEIVLNVDLAPTFLDMGGVPTPQHMDGRSILPLL
LSRNRAVRDNWPDSFLIESSGRRETAEQIAESRARLQIERRNMKLANSSL
LEDFLEGAGESTTIVSSSSTAATLMSSTAQQPEDGEEEVETDNEEDDVDG
DGAMDSSAAALEEDDLDDAAFEEGDEELDQEFQQNNDLPLAPYITKMMRL
NSECSDPALLKNCLPGQKWKCVNEEGRWRKHKCKFHLQLEHQLAAMPRKQ
YQRNCACFTPDGVVYTKIRAPSAGLHRVNKRTHNGPGRRRNKREVFHTEL
PDEMEELLDLHQVVDQLVDHTHRSKRDLPASSNETIAQVIQQIQSTLEIL
ELKFNEHELHASNSSGNSYERGEKYTKSGGHRCFVDATTAKVNCSNVIYD
DEKTWRTSRTQIDMLIKLLKDKIGKLKEMKKQLRESNKQALAAGRRNDNR
RRNDQSVLDSGAGPEFNMSYFTEISSTPRSNVVGQTEVFQGYGSASAFDS
LEQTQSHRFTPRAECYCEPDVGENHADSKEMAREARRKLKEERQRKKERK
RIKKARLEKECLSEKMNCFSHDNQHWRTAPLWNDSPFCFCMNANNNTYSC
LRTINGTHNFLYCEFTTGLITFYNLTIDRFETINRAAGLTPGERSHMHDA
LDQLKSCRGRSCSIRRHQNHLEGGSSAPLLPINQVHRNNKRKHSPLAGAV
GNYAFVGPRLDMEALPPIKRRKLSKYNRLTGSQQSHMKRRPWKQTPLQQS
PRFLRTHSVTPAQAASFLDH
BO28727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sulf1-PC | 1114 | CG6725-PC | 1..1114 | 1..1114 | 5914 | 100 | Plus |
| Sulf1-PB | 1114 | CG6725-PB | 1..1114 | 1..1114 | 5914 | 100 | Plus |
| Sulf1-PA | 1114 | CG6725-PA | 1..1114 | 1..1114 | 5914 | 100 | Plus |
| CG18278-PA | 492 | CG18278-PA | 17..373 | 47..407 | 689 | 40.9 | Plus |
| CG30059-PA | 492 | CG30059-PA | 17..373 | 47..407 | 687 | 40.9 | Plus |
