BO28728.complete Sequence
5695 bp assembled on 2011-09-20
GenBank Submission: KX796063
> BO28728.complete
GAAGTTATCAGTCGACATGAGCACCCCCACGGACTCGAAGGCGCCGTTGC
GCCAGGTGAAGCGCGTACAGTTCGGCATTTTGTCCCCTGATGAAATTCGT
CGCATGTCCGTCACCGAGGGTGGCGTCCAGTTTGCGGAGACAATGGAGGG
CGGACGACCAAAGCTGGGCGGATTGATGGATCCGCGCCAGGGTGTCATAG
ACAGGACGTCGCGCTGTCAGACGTGCGCCGGCAATATGACCGAGTGCCCC
GGTCACTTTGGACACATCGACCTGGCCAAACCAGTGTTCCACATCGGCTT
CATCACCAAGACAATTAAGATTTTGCGATGTGTGTGCTTCTACTGCTCCA
AAATGTTGGTCTCGCCACACAATCCAAAGATCAAGGAGATCGTTATGAAG
TCTAGGGGACAGCCGCGTAAGCGCCTGGCCTACGTCTATGATCTGTGCAA
GGGCAAGACGATTTGCGAGGGCGGCGAGGACATGGATCTCACCAAGGAGA
ACCAGCAGCCGGATCCAAACAAAAAGCCCGGCCACGGCGGTTGCGGTCAC
TACCAGCCGTCGATCCGGAGAACAGGACTGGATCTCACCGCCGAGTGGAA
GCATCAGAACGAGGATTCGCAGGAGAAGAAGATCGTGGTCTCGGCAGAGC
GGGTTTGGGAAATCCTTAAGCATATCACCGATGAGGAGTGCTTTATTCTG
GGCATGGATCCCAAGTATGCGCGTCCCGATTGGATGATCGTGACCGTCCT
GCCTGTTCCACCGTTGGCCGTACGGCCAGCGGTCGTGATGTTTGGTGCTG
CCAAGAATCAGGATGATTTGACGCACAAGCTGTCCGATATCATCAAGGCA
AACAATGAGCTTCGCAAGAACGAGGCCAGTGGTGCCGCAGCGCATGTGAT
CCAGGAGAACATCAAGATGCTGCAATTCCACGTCGCCACACTAGTGGACA
ACGATATGCCCGGCATGCCCAGGGCTATGCAAAAGTCGGGAAAACCCCTT
AAAGCCATCAAGGCGCGACTCAAGGGTAAGGAGGGTAGGATTCGTGGCAA
CTTGATGGGCAAACGTGTCGACTTCTCCGCCCGTACTGTCATCACACCCG
ATCCAAATCTGCGTATCGATCAGGTCGGTGTGCCGCGTTCCATTGCCCAG
AATCTAACCTTCCCCGAGCTGGTCACTCCCTTCAACATCGATCGCATGCA
GGAGCTGGTGCGCAGGGGTAATTCGCAGTATCCGGGTGCCAAGTACATTG
TGCGCGACAATGGCGAGCGTATTGATCTTCGCTTTCATCCTAAATCCTCT
GATTTACATCTGCAGTGCGGCTACAAGGTAGAGCGGCATTTGCGCGACGA
CGATCTGGTGATCTTCAACCGACAGCCCACGCTGCACAAGATGAGTATGA
TGGGTCACAGGGTGAAAGTGTTGCCCTGGTCGACTTTCCGCATGAACCTG
TCGTGTACATCGCCCTACAATGCTGATTTCGACGGCGATGAAATGAATTT
GCACGTTCCGCAGTCCATGGAGACGCGCGCCGAGGTGGAGAACATCCACA
TCACACCCAGACAGATCATCACGCCGCAGGCGAACAAACCTGTCATGGGT
ATCGTGCAGGACACTCTGACTGCGGTGCGAAAGATGACCAAGCGCGACGT
ATTCATCACGCGCGAGCAGGTGATGAATCTGCTCATGTTCCTGCCCACGT
GGGACGCTAAAATGCCGCAACCCTGCATCCTGAAACCGCGTCCCCTGTGG
ACGGGCAAACAGATCTTCTCCCTGATCATCCCCGGCAACGTGAACATGAT
ACGCACACATTCCACGCATCCGGACGAGGAGGATGAAGGACCATACAAGT
GGATCTCGCCCGGTGACACCAAGGTAATGGTGGAGCACGGTGAACTTATC
ATGGGGATCCTCTGCAAGAAGTCACTGGGTACATCAGCCGGATCACTGCT
GCATATTTGTTTCCTGGAACTTGGTCACGATATCGCTGGTCGGTTCTATG
GCAACATTCAGACCGTGATCAACAATTGGTTGCTTTTCGAGGGCCATAGT
ATCGGTATTGGTGACACTATTGCCGATCCCCAGACCTACAACGAGATCCA
GCAGGCCATCAAGAAGGCAAAGGACGACGTGATAAACGTTATCCAAAAGG
CCCACAACATGGAGCTGGAGCCCACGCCGGGTAATACTCTGCGTCAGACG
TTCGAGAACAAGGTGAACCGTATCCTAAACGATGCTCGTGACAAGACTGG
TGGTTCGGCCAAGAAATCTCTCACTGAGTACAACAATCTAAAGGCTATGG
TGGTGTCTGGTTCCAAGGGTTCCAACATTAATATATCCCAGGTTATTGCT
TGTGTGGGTCAACAGAACGTGGAGGGTAAGCGAATCCCCTACGGTTTCCG
CAAACGCACTCTTCCCCACTTTATTAAGGACGATTATGGTCCTGAGTCGC
GCGGTTTCGTGGAGAATTCGTATCTTGCCGGCCTGACACCCTCTGAGTTC
TATTTCCACGCTATGGGTGGTCGTGAAGGTCTTATCGATACTGCTGTAAA
GACAGCTGAAACCGGTTACATCCAGCGTCGTCTTATAAAGGCTATGGAGT
CGGTGATGGTTAACTACGACGGAACAGTGCGTAACTCGGTGGGCCAGCTT
ATTCAGCTGCGTTACGGCGAGGACGGTCTTTGCGGCGAGCTGGTTGAGTT
CCAGAACATGCCAACGGTGAAACTGTCGAACAAGTCGTTTGAAAAGCGCT
TCAAATTTGACTGGAGCAACGAGCGATTAATGAAAAAGGTATTTACGGAT
GATGTGATCAAGGAGATGACCGACAGCAGCGAAGCCATCCAGGAACTGGA
GGCAGAGTGGGATCGTTTGGTTTCCGATCGCGACAGTTTGAGACAAATCT
TCCCTAACGGCGAATCCAAGGTGGTACTGCCGTGCAACCTGCAGCGTATG
ATCTGGAATGTGCAGAAGATCTTTCACATCAACAAGCGCCTGCCCACGGA
TCTCTCGCCCATTCGGGTGATCAAGGGCGTTAAGACATTGCTCGAACGCT
GTGTTATTGTCACGGGAAATGATCGAATTTCAAAGCAGGCCAACGAGAAC
GCCACGTTGCTATTCCAGTGCCTAATCCGTTCGACACTATGTACGAAATA
CGTGTCGGAGGAGTTCCGCCTGTCCACAGAGGCGTTTGAGTGGTTGGTCG
GAGAAATCGAGACGCGTTTCCAACAGGCCCAGGCCAATCCCGGCGAGATG
GTGGGTGCCCTGGCTGCCCAGAGTTTGGGTGAGCCCGCTACTCAGATGAC
ACTGAACACCTTCCATTTTGCTGGTGTGTCTTCAAAGAACGTAACATTGG
GTGTGCCGCGTCTCAAGGAGATTATCAACATATCCAAAAAGCCCAAAGCG
CCGTCGCTAACCGTTTTCCTTACTGGCGGCGCTGCTCGCGATGCGGAGAA
GGCCAAGAACGTACTGTGCCGCCTGGAGCATACCACGCTGCGCAAGGTTA
CGGCCAATACGGCTATTTACTACGACCCGGATCCGCAGAGAACGGTGATA
TCCGAGGATCAAGAATTTGTGAATGTCTACTACGAAATGCCCGACTTTGA
TCCCACACGCATTTCGCCCTGGTTGCTACGTATTGAATTGGACCGCAAGC
GGATGACGGACAAGAAGCTGACAATGGAACAGATCGCCGAGAAGATTAAC
GTGGGCTTCGGGGAGGATCTCAATTGTATTTTCAATGACGACAATGCCGA
TAAGCTGGTGCTGCGCATTAGGATCATGAACAACGAAGAGAACAAGTTCC
AGGACGAAGACGAGGCCGTCGACAAGATGGAGGACGACATGTTCTTGCGC
TGCATTGAGGCCAACATGCTGTCGGACATGACACTGCAGGGTATCGAAGC
CATCGGCAAGGTGTACATGCATCTGCCACAGACCGACAGCAAGAAGCGTA
TCGTGATCACTGAGACCGGAGAGTTTAAGGCCATCGGCGAGTGGCTGCTC
GAGACGGACGGCACATCGATGATGAAAGTGCTGTCTGAGCGTGACGTGGA
CCCAATCCGAACATCCTCCAACGATATTTGCGAGATATTCCAGGTGCTGG
GCATCGAGGCGGTGCGAAAGTCTGTCGAAAAGGAGATGAACGCCGTGTTG
CAGTTCTACGGCCTGTACGTGAACTATCGTCACTTGGCCCTGTTGTGCGA
TGTGATGACGGCCAAGGGCCATCTGATGGCCATCACCCGTCACGGCATTA
ACAGGCAAGACACTGGTGCCCTTATGCGTTGCTCCTTTGAGGAGACAGTG
GATGTGCTAATGGATGCCGCCGCTCACGCCGAAACGGATCCCATGAGGGG
CGTCTCTGAGAACATTATCATGGGACAGCTGCCCAAAATGGGTACCGGCT
GCTTTGACCTTCTGCTCGATGCAGAGAAGTGTCGTTTCGGCATCGAGATT
CCCAATACGTTGGGCAACAGTATGCTAGGTGGCGCCGCTATGTTCATTGG
CGGTGGATCGACACCGAGCATGACGCCACCGATGACGCCGTGGGCTAACT
GCAACACGCCGCGATACTTCTCTCCACCCGGCCACGTAAGTGCCATGACT
CCTGGCGGTCCCAGTTTCTCGCCTTCGGCTGCATCGGATGCGTCCGGAAT
GTCGCCTAGCTGGTCGCCGGCTCATCCGGGCTCATCGCCCAGTTCACCAG
GACCTTCGATGTCGCCGTATTTCCCAGCCTCGCCGAGTGTTTCTCCCTCT
TATTCGCCAACGAGTCCGAACTACACGGCATCTTCTCCCGGTGGAGCCTC
GCCGAATTACTCGCCCTCGAGTCCGAACTATTCGCCGACGTCGCCGCTTT
ATGCAAGTCCACGTTACGCATCGACAACGCCAAATTTCAATCCACAGTCG
ACGGGTTACTCGCCATCTTCATCGGGATACTCGCCAACATCCCCGGTCTA
CTCGCCCACGGTGCAATTCCAGTCGAGTCCGTCGTTTGCGGGCAGCGGTA
GCAACATTTACTCGCCGGGCAATGCGTACTCGCCCAGCTCGTCCAACTAC
TCCCCCAATTCACCATCCTACTCGCCGACATCACCATCGTACTCGCCGTC
AAGTCCTTCGTACTCGCCAACGTCGCCTTGCTATTCGCCCACATCGCCTT
CGTACTCGCCAACGAGTCCGAACTACACACCCGTAACACCCTCATACTCG
CCGACAAGTCCGAACTATTCAGCGTCGCCGCAATATTCTCCAGCCTCGCC
AGCTTACTCGCAAACGGGGGTGAAGTACTCACCGACATCGCCGACGTACT
CGCCGCCGTCACCATCGTACGATGGGTCTCCCGGATCACCACAATATACG
CCAGGATCTCCGCAGTACTCGCCGGCCTCGCCTAAGTACTCGCCGACCTC
ACCGCTGTACTCGCCCAGCTCGCCGCAGCACTCGCCCTCAAACCAGTACA
GCCCAACAGGATCGACCTATTCGGCGACGAGTCCGCGGTACTCGCCGAAC
ATGTCCATCTACTCGCCGAGCAGCACCAAGTACTCGCCCACCTCGCCAAC
GTACACACCGACGGCCCGCAACTACTCGCCCACGTCACCGATGTACTCGC
CAACGGCTCCATCGCACTACAGTCCCACGAGTCCGGCCTACTCGCCCAGC
AGTCCCACGTTCGAGGAGAGCGAAGACGCAAGCTTTCTAGACCAT
BO28728.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII215-RA | 5664 | CG1554-PA | 1..5661 | 17..5677 | 28305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII215-RA | 6736 | CG1554-RA | 361..6021 | 17..5677 | 28305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11564734..11566982 | 4586..2338 | 11245 | 100 | Minus |
| X | 23542271 | X | 11567041..11569286 | 2343..98 | 11230 | 100 | Minus |
| X | 23542271 | X | 11563515..11564606 | 5677..4586 | 5460 | 100 | Minus |
| X | 23542271 | X | 11569886..11569966 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:45:09 has no hits.
BO28728.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:34 Download gff for
BO28728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII215-RA | 357..6017 | 17..5679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:11 Download gff for
BO28728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII215-RA | 361..6021 | 17..5679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:45 Download gff for
BO28728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII215-RA | 361..6021 | 17..5679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:45 Download gff for
BO28728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11563512..11564605 | 4587..5679 | 99 | <- | Minus |
| X | 11564734..11566978 | 2342..4586 | 100 | <- | Minus |
| X | 11567043..11569286 | 98..2341 | 100 | <- | Minus |
| X | 11569886..11569966 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:11 Download gff for
BO28728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11457545..11458638 | 4587..5679 | 99 | <- | Minus |
| arm_X | 11458767..11461011 | 2342..4586 | 100 | <- | Minus |
| arm_X | 11461076..11463319 | 98..2341 | 100 | <- | Minus |
| arm_X | 11463919..11463999 | 17..97 | 100 | | Minus |
BO28728.pep Sequence
Translation from 16 to 5695
> BO28728.pep
MSTPTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKL
GGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTI
KILRCVCFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKGKTIC
EGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQNED
SQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPL
AVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR
VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRR
GNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIF
NRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQS
METRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITRE
QVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFL
ELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKK
AKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKK
SLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLP
HFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETG
YIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPT
VKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDR
LVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIR
VIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEF
RLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFH
FAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVL
CRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRIS
PWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLR
IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVY
MHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTS
SNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAK
GHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENI
IMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAAMFIGGGSTP
SMTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWS
PAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP
SSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQ
FQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYS
PTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQT
GVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSP
SSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTA
RNYSPTSPMYSPTAPSHYSPTSPAYSPSSPTFEESEDASFLDH
BO28728.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII215-PA | 1887 | CG1554-PA | 1..1887 | 1..1887 | 9977 | 100 | Plus |
| CG17209-PC | 1383 | CG17209-PC | 13..916 | 12..899 | 1498 | 38 | Plus |
| RpI1-PA | 1642 | CG10122-PA | 293..1002 | 238..888 | 880 | 32.8 | Plus |
| Vml-PB | 578 | CG34333-PB | 61..456 | 1513..1876 | 483 | 40.5 | Plus |
| Vml-PA | 578 | CG34333-PA | 61..456 | 1513..1876 | 483 | 40.5 | Plus |
| CG17209-PC | 1383 | CG17209-PC | 998..1360 | 1052..1470 | 475 | 32.9 | Plus |
| Vml-PB | 578 | CG34333-PB | 85..524 | 1490..1893 | 466 | 38.3 | Plus |
| Vml-PB | 578 | CG34333-PB | 55..447 | 1571..1890 | 434 | 37.7 | Plus |
| Vml-PB | 578 | CG34333-PB | 181..557 | 1490..1838 | 343 | 35.5 | Plus |
| Vml-PB | 578 | CG34333-PB | 50..311 | 1667..1890 | 329 | 38.8 | Plus |
| RpI1-PA | 1642 | CG10122-PA | 1172..1273 | 1073..1172 | 213 | 48 | Plus |
| RpI1-PA | 1642 | CG10122-PA | 1465..1638 | 1287..1466 | 205 | 32 | Plus |
