BO28731.complete Sequence
925 bp assembled on 2011-08-24
GenBank Submission: KX793909
> BO28731.complete
GAAGTTATCAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGT
CAGAGAATCTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTC
CAGTCGCAATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTG
TCAGTTCATGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCA
AATTTCGTACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTG
CAGGCGGGCTTCAAGAAGATGTCTGTGGATAAGATCATTCCAGTTGATAA
ACTGATTAAGGGACGCTTTCAAGACAACTTTGAGTTCCTTCAATGGTTTA
AAAAATTCTTCGACGCCAATTACGACGGTCGCGAGTACGACCCCGTGGCT
CAGCGGGGCGGAGTCAAGCTGGGCAATGGCAACGGACACGGCAGCAACGG
AGGCAGTGGCGTGGGCAGCAGCAACAACGATCTCCATCTGATGCACCGGC
GACCATTGCAGGCTCCAGCTTCTGGCGGACGAATGCCAGCACGGGTCATC
GCTTCAACTGCAGTATCCAAGGTGCTGCCGCGCACGAACAACGCAGCCCC
AGCGAGCAGAATAAACGCCTGTGCCAACAGCACGGGCACGGTCAAGAAGA
ACGACGTGAGCAATTCGGTCAACAATCAACAAATAGAAGAGATGTCAAAT
CAGGTGATGGATATGCGCATAAACCTGGAGGGATTGGAAAAGGAGCGAGA
CTTTTACTTCTCTAAGTTGCGGGATATTGAAATTCTTTGCCAAGAAGCCG
ATGACGCCGAGGCGCATCCGATCATACAAAAGATTTTGGACATCTTATAT
GCGACTGAGGATGGTTTTGCGCCGCCTGACGATGCACCACCAGAGGACGA
GGAGTATGCAAGCTTTCTAGACCAT
BO28731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RF | 894 | CG3265-PF | 1..891 | 17..907 | 4455 | 100 | Plus |
| Eb1-RG | 876 | CG3265-PG | 527..873 | 561..907 | 1735 | 100 | Plus |
| Eb1-RA | 876 | CG3265-PA | 527..873 | 561..907 | 1735 | 100 | Plus |
| Eb1-RG | 876 | CG3265-PG | 1..359 | 17..375 | 1525 | 95 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RF | 1891 | CG3265-RF | 194..1086 | 15..907 | 4465 | 100 | Plus |
| Eb1-RG | 2043 | CG3265-RG | 629..975 | 561..907 | 1735 | 100 | Plus |
| Eb1-RA | 1873 | CG3265-RA | 722..1068 | 561..907 | 1735 | 100 | Plus |
| Eb1-RG | 2043 | CG3265-RG | 101..461 | 15..375 | 1535 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6753225..6753503 | 282..560 | 1395 | 100 | Plus |
| 3L | 28110227 | 3L | 25202057..25202409 | 15..375 | 1150 | 89.2 | Plus |
| 3L | 28110227 | 3L | 25202577..25202847 | 561..833 | 1090 | 94.1 | Plus |
| 2R | 25286936 | 2R | 6752841..6752988 | 136..283 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 6754701..6754847 | 560..706 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 6752662..6752786 | 15..139 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 6754894..6754981 | 699..786 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6755045..6755118 | 787..860 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 6755183..6755232 | 858..907 | 250 | 100 | Plus |
| 3L | 28110227 | 3L | 7767870..7768147 | 397..120 | 250 | 72.7 | Minus |
| 2R | 25286936 | 2R | 6754204..6754271 | 308..375 | 205 | 86.8 | Plus |
| 2R | 25286936 | 2R | 18852347..18852410 | 364..301 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:40:56 has no hits.
BO28731.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:30 Download gff for
BO28731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RF | 231..1121 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:37 Download gff for
BO28731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RF | 196..1086 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:36 Download gff for
BO28731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RF | 196..1086 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:36 Download gff for
BO28731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6752664..6752784 | 17..137 | 100 | -> | Plus |
| 2R | 6752843..6752988 | 138..283 | 100 | -> | Plus |
| 2R | 6753227..6753503 | 284..560 | 100 | -> | Plus |
| 2R | 6754702..6754844 | 561..703 | 100 | -> | Plus |
| 2R | 6754899..6754981 | 704..786 | 100 | -> | Plus |
| 2R | 6755045..6755117 | 787..859 | 100 | -> | Plus |
| 2R | 6755185..6755232 | 860..909 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:37 Download gff for
BO28731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2640169..2640289 | 17..137 | 100 | -> | Plus |
| arm_2R | 2640348..2640493 | 138..283 | 100 | -> | Plus |
| arm_2R | 2640732..2641008 | 284..560 | 100 | -> | Plus |
| arm_2R | 2642207..2642349 | 561..703 | 100 | -> | Plus |
| arm_2R | 2642404..2642486 | 704..786 | 100 | -> | Plus |
| arm_2R | 2642550..2642622 | 787..859 | 100 | -> | Plus |
| arm_2R | 2642690..2642737 | 860..909 | 96 | | Plus |
BO28731.pep Sequence
Translation from 16 to 925
> BO28731.pep
MAVNVYSTNVTSENLSRHDMLAWVNDCLQSQFSKIEELCTGAAYCQFMDM
LFPNSVPVKRVKFRTNLEHEYIQNFKILQAGFKKMSVDKIIPVDKLIKGR
FQDNFEFLQWFKKFFDANYDGREYDPVAQRGGVKLGNGNGHGSNGGSGVG
SSNNDLHLMHRRPLQAPASGGRMPARVIASTAVSKVLPRTNNAAPASRIN
ACANSTGTVKKNDVSNSVNNQQIEEMSNQVMDMRINLEGLEKERDFYFSK
LRDIEILCQEADDAEAHPIIQKILDILYATEDGFAPPDDAPPEDEEYASF
LDH
BO28731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-PF | 297 | CG3265-PF | 1..297 | 1..297 | 1560 | 100 | Plus |
| Eb1-PE | 290 | CG3265-PE | 1..290 | 1..297 | 1269 | 84.4 | Plus |
| Eb1-PG | 291 | CG3265-PG | 1..291 | 1..297 | 1265 | 83.7 | Plus |
| Eb1-PA | 291 | CG3265-PA | 1..291 | 1..297 | 1265 | 83.7 | Plus |
| Eb1-PD | 291 | CG3265-PD | 1..291 | 1..297 | 1265 | 83.7 | Plus |
