BO28734.complete Sequence
1396 bp assembled on 2011-08-24
GenBank Submission: KX798865
> BO28734.complete
GAAGTTATCAGTCGACATGAAAGCTGGCCGCGCCTTCGGCTGCCTTTTCT
GGGCTCTGCTCTATTGTGTGCTCTATCTGGATCTGGTCAGTGGGAACTCC
GCCGACGATGAGCTGATGGACTTTGATTTTGCGGATTCAAATGATGCTGC
TATGGAGGACTGGCAGCTGGATGATCTGGAGGAGGCAAAAAAGGCGGAGC
AGGCCGAAAAGAAGTTGGAGTCGAATATGCTGGACTTTAGCGTAGATCTG
GATGAACCGGAGCCGGAGAAACAATTACCACCTTTCGATTGGCGAGAAAG
GGTTTTAAGAAACGCTCTGGCCAAAGCCTTGGCGGATGAGGGATTGCGCC
AGAAGTTCGCCGAAGTTTTGCCCATTTTAAGAATGCTATCTTCTCAACAG
CGCCTGGCTCTTTCCGCTTTGATCTCGGCTCAGATGAATGCAAAAAAGGG
GCACGAACTAAAGTTTGAACAGGTTCGCATGATGTTTGGCAATGAAAAAA
AGCTGCTTTTGCCCATAGTGTTCGACATCGCAAATCTCATAAAGAGCTCT
ACCCGCAAGTACATCAATCTGGGTTCTGATCTGGCTTCATCTGCCCTTTA
CCATACTCCCATCAATCGTCGTGAAGATGATTTGACTCCAGAAGAGTCCC
AACAGGATGACCAATTGGGCACCATTGCTGTGGAAGTTGAGCCAAAAAAG
GTCTCTACTGAGGAGGTGCAATTGGAGTCTCTAGAGGACTTCTTTGATGA
GATGGGGTCAGAAGTGCTTGATCCTCAGATGATCAATGAGGCCCTGACAG
GTGATCTTCATGATAACAAAACCAAGACTTTTAAACCAGAAAATCATGGT
CAAAGAGTTCGACGATCGGCAAACGAGTTTGTTCACAAATTGACCCGATC
CGTGCCTGCTTCTGTGACCGAGCAGCAACTTTTGGGTGGCATTGCTGGAC
GTACCATCAAGCTGAATACCACAGCTTTTCAACAGCCAAGTAGCCAGGAG
GAGGAGAAGATGGCCTCCTCCAATGGTGGCCAGTCATACTCTGAGGTGGA
GGATCTGGCTTTTGCTGGTCTTAATGGCACGGAAATCCCCCTGAGCGCTG
ATGAGCGATTAGATCTGCAAAGAAACAGCGCCGAGGAGACTGAGGAACCA
CTACCAAGTCCAGAGGAACTCATCGCTGGACCACGTTACCGACTGGGGAA
AAGACCACTGCCTGGTCAAAAATCTGGATCTCCCATCAAACGAAAGAGAG
TCACATCCTCCTTAAGGGGAAGACCGAAGACCGCCGCCAGTTCCCATAAA
CCCGTGGTTACACCACCCAACAAGAAATGCGAACGATTCACCAGCAACAT
GTGCATCCGAACCGACGACTATCCGCTGGCAAGCTTTCTAGACCAT
BO28734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NT1-RE | 1365 | CG42576-PE | 1..1362 | 17..1378 | 6810 | 100 | Plus |
| NT1-RB | 1365 | CG42576-PB | 1..1362 | 17..1378 | 6810 | 100 | Plus |
| NT1-RC | 1365 | CG42576-PC | 1..1362 | 17..1378 | 6810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NT1-RE | 1900 | CG42576-RE | 421..1782 | 17..1378 | 6810 | 100 | Plus |
| NT1-RB | 2012 | CG42576-RB | 533..1894 | 17..1378 | 6810 | 100 | Plus |
| NT1-RC | 1608 | CG42576-RC | 129..1490 | 17..1378 | 6810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4504403..4505311 | 1378..470 | 4545 | 100 | Minus |
| 3L | 28110227 | 3L | 4505398..4505855 | 474..17 | 2290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:39:28 has no hits.
BO28734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:28 Download gff for
BO28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NT1-RE | 417..1778 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:54 Download gff for
BO28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NT1-RC | 129..1490 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:57 Download gff for
BO28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NT1-RC | 129..1490 | 17..1380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:57 Download gff for
BO28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4504401..4505308 | 473..1380 | 99 | <- | Minus |
| 3L | 4505400..4505855 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:54 Download gff for
BO28734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4504401..4505308 | 473..1380 | 99 | <- | Minus |
| arm_3L | 4505400..4505855 | 17..472 | 100 | | Minus |
BO28734.pep Sequence
Translation from 16 to 1396
> BO28734.pep
MKAGRAFGCLFWALLYCVLYLDLVSGNSADDELMDFDFADSNDAAMEDWQ
LDDLEEAKKAEQAEKKLESNMLDFSVDLDEPEPEKQLPPFDWRERVLRNA
LAKALADEGLRQKFAEVLPILRMLSSQQRLALSALISAQMNAKKGHELKF
EQVRMMFGNEKKLLLPIVFDIANLIKSSTRKYINLGSDLASSALYHTPIN
RREDDLTPEESQQDDQLGTIAVEVEPKKVSTEEVQLESLEDFFDEMGSEV
LDPQMINEALTGDLHDNKTKTFKPENHGQRVRRSANEFVHKLTRSVPASV
TEQQLLGGIAGRTIKLNTTAFQQPSSQEEEKMASSNGGQSYSEVEDLAFA
GLNGTEIPLSADERLDLQRNSAEETEEPLPSPEELIAGPRYRLGKRPLPG
QKSGSPIKRKRVTSSLRGRPKTAASSHKPVVTPPNKKCERFTSNMCIRTD
DYPLASFLDH
BO28734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NT1-PH | 1042 | CG42576-PH | 1..458 | 1..458 | 2318 | 99.1 | Plus |
| NT1-PG | 1042 | CG42576-PG | 1..458 | 1..458 | 2318 | 99.1 | Plus |
| NT1-PD | 886 | CG42576-PD | 1..458 | 1..458 | 2318 | 99.1 | Plus |
| NT1-PF | 1042 | CG42576-PF | 1..458 | 1..458 | 2318 | 99.1 | Plus |
| NT1-PE | 454 | CG42576-PE | 1..454 | 1..454 | 2317 | 100 | Plus |
