BO28735.complete Sequence
1189 bp assembled on 2011-08-24
GenBank Submission: KX799269
> BO28735.complete
GAAGTTATCAGTCGACATGTTCGCATTGGCCTTGACGGTGGCGGCCTTGG
TGCTTGCCGGCCAGCAGGAGGTGTGCCGCGCACAGGTCTCCATCCACACG
GACGCCAACTCGAACTCCTACAGCCTGAAGACGCCCGGAGTGCAGCAGAC
CTTCACCCGGTACTACGGAGGAGCGGCCAAGAACCAGCAGGTGGAGCAGC
CGCAGCTGCAGCAGCCGCAGGAGCAGGAGCAGTTGCAAACTCCCACGCAA
TTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGTACTCGCA
GCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAACTCGCTGC
TCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAA
CAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGCAGCAACT
CCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCAGGAGTGG
GCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCAGATGCAC
GCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGCAGCAGCA
GCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTATCCGGCG
GCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCAGATAGCT
GCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCACAGAACGC
AGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAATGGCCTGC
AGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCCAGTAAGA
GGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAGCGCCTTT
GCGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTACTCCACGC
AACAGCACATGGGCTTCATGCAGCAGCAGCAGCAGGACGTGCTCCGTGAC
CAGCAGCAGTCGGTGGCCCATCAGTTCGCCACCAGCCAGTTGGCGCCCAC
CACCCGCCAGAGCTATGGGATGGCCGTTCCCATGTCCTCCGTGCTGGGAT
CCCCCACCTACCAGCAATCGCCGGACGTCTCTCATGTGAGCTTCTCAAGC
GGCAATCTCAACTACAGCTTCGCAAGCTTTCTAGACCAT
BO28735.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32548-RB | 1158 | CG32548-PB | 1..1155 | 17..1171 | 5775 | 100 | Plus |
| CG32548-RC | 1065 | CG32548-PC | 127..1062 | 236..1171 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32548-RB | 1475 | CG32548-RB | 173..1328 | 16..1171 | 5780 | 100 | Plus |
| CG32548-RC | 1382 | CG32548-RC | 300..1235 | 236..1171 | 4680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18435866..18436802 | 1171..235 | 4685 | 100 | Minus |
| X | 23542271 | X | 18440190..18440409 | 235..16 | 1100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:39:44 has no hits.
BO28735.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:29 Download gff for
BO28735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RB | 179..1328 | 22..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:03 Download gff for
BO28735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RB | 179..1328 | 22..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:04 Download gff for
BO28735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RB | 179..1328 | 22..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:04 Download gff for
BO28735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18435864..18436801 | 236..1173 | 99 | <- | Minus |
| X | 18440190..18440403 | 22..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:03 Download gff for
BO28735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18334223..18334436 | 22..235 | 100 | | Minus |
| arm_X | 18329897..18330834 | 236..1173 | 99 | <- | Minus |
BO28735.pep Sequence
Translation from 16 to 1189
> BO28735.pep
MFALALTVAALVLAGQQEVCRAQVSIHTDANSNSYSLKTPGVQQTFTRYY
GGAAKNQQVEQPQLQQPQEQEQLQTPTQFGGFSPSGQQYPAVYSQPGFRA
DGKLKVTPNSLLQQQQQQQQQQQQQQQQQQQQQQQQLLAQQQQQLLAATS
PQVAAASGPGVGVSGGVVNMPSYADQMHAAFLDYQRQRAEFEQQQQHLLQ
KLYHYYPDVSGGLTSPAHQIQPQTPQIAAPADVGGAPAGVAAQNAAGRFA
YRRPQFSNNGLQPERLASGSIVPGGPVRGGPVGVIPGGVIGSAPLRSNSL
GGGASGDFYSTQQHMGFMQQQQQDVLRDQQQSVAHQFATSQLAPTTRQSY
GMAVPMSSVLGSPTYQQSPDVSHVSFSSGNLNYSFASFLDH
BO28735.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32548-PB | 385 | CG32548-PB | 1..385 | 1..385 | 1979 | 100 | Plus |
| CG32548-PC | 354 | CG32548-PC | 43..354 | 74..385 | 1612 | 100 | Plus |
| Atx2-PA | 888 | CG5166-PA | 471..797 | 27..315 | 201 | 28.6 | Plus |
| Atx2-PD | 1023 | CG5166-PD | 471..797 | 27..315 | 201 | 28.6 | Plus |
| Atx2-PC | 1023 | CG5166-PC | 471..797 | 27..315 | 201 | 28.6 | Plus |
