BO28740.complete Sequence
415 bp assembled on 2011-08-24
GenBank Submission: KX796383
> BO28740.complete
GAAGTTATCAGTCGACATGTCGCCGAGAAGGAGCTTGCTGTGCTGCCTGC
TGGTGAGCAGCATCCTAGTGCTGCACCAGGCTCAGGCCAACATCGAGACA
AACGATGTGAATGACCCCAGTTACTACATGCTGCAGGGTGTGCGTGTGTA
TCCCAATGACCGACAGTGCGTCATGGTCGGAGGACTGTGTGTCGCGGAGT
CGGACTGCATCGAACCCACCTCGAACAAGGGATTGTGTCCCACGAGTGCC
GGAGAGGGCGTGGAGTGCTGCTACGAACTGCCGGTCAGACCAGCGCCCTG
TGCGGAACACCTGGGACAGTGCATGGACCGATGCCACCAGAGGCTCCTGC
GACCCGGTTCGGATTGCAAGAATGGCCAAGTCTGCTGCGTCCTGATTGCA
AGCTTTCTAGACCAT
BO28740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10433-RC | 384 | CG10433-PC | 1..381 | 17..397 | 1905 | 100 | Plus |
| CG10433-RA | 384 | CG10433-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
| CG10433-RB | 297 | CG10433-PB | 1..263 | 17..279 | 1315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10433-RC | 1945 | CG10433-RC | 1166..1546 | 17..397 | 1905 | 100 | Plus |
| CG10433-RA | 945 | CG10433-RA | 166..546 | 17..397 | 1905 | 100 | Plus |
| CG10433-RB | 1112 | CG10433-RB | 166..428 | 17..279 | 1315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21606468..21606617 | 278..129 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 21606075..21606193 | 397..279 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 21606681..21606792 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:43:17 has no hits.
BO28740.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:35 Download gff for
BO28740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10433-RA | 162..542 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:52 Download gff for
BO28740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10433-RA | 166..546 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:35 Download gff for
BO28740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10433-RA | 166..546 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:35 Download gff for
BO28740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21606073..21606193 | 279..399 | 98 | <- | Minus |
| 2R | 21606468..21606617 | 129..278 | 100 | <- | Minus |
| 2R | 21606681..21606792 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:52 Download gff for
BO28740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17493578..17493698 | 279..399 | 98 | <- | Minus |
| arm_2R | 17493973..17494122 | 129..278 | 100 | <- | Minus |
| arm_2R | 17494186..17494297 | 17..128 | 100 | | Minus |
BO28740.pep Sequence
Translation from 16 to 415
> BO28740.pep
MSPRRSLLCCLLVSSILVLHQAQANIETNDVNDPSYYMLQGVRVYPNDRQ
CVMVGGLCVAESDCIEPTSNKGLCPTSAGEGVECCYELPVRPAPCAEHLG
QCMDRCHQRLLRPGSDCKNGQVCCVLIASFLDH
BO28740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10433-PC | 127 | CG10433-PC | 1..127 | 1..127 | 702 | 100 | Plus |
| CG10433-PA | 127 | CG10433-PA | 1..127 | 1..127 | 702 | 100 | Plus |
| CG10433-PB | 98 | CG10433-PB | 1..96 | 1..96 | 485 | 93.8 | Plus |
