BO28742.complete Sequence
439 bp assembled on 2011-08-24
GenBank Submission: KX796100
> BO28742.complete
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACTAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGTCACGTTCGCCACGTC
GCTCCCGATCGCCCCGCAGCCGCAGCTTCTCGCGCGATCGTCGAAGTCGC
TCGGATTCTCGGGATCGTCATGCAAGCTTTCTAGACCAT
BO28742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RA | 408 | CG17136-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
Rbp1-RD | 435 | CG17136-PD | 1..318 | 17..334 | 1590 | 100 | Plus |
Rbp1-like-RC | 477 | CG1987-PC | 19..224 | 35..240 | 460 | 81.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RA | 773 | CG17136-RA | 149..553 | 17..421 | 2025 | 100 | Plus |
Rbp1-RD | 1528 | CG17136-RD | 149..466 | 17..334 | 1590 | 100 | Plus |
Rbp1-like-RC | 1456 | CG1987-RC | 208..413 | 35..240 | 460 | 81.6 | Plus |
Rbp1-RD | 1528 | CG17136-RD | 1218..1308 | 331..421 | 455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10784607..10784925 | 17..335 | 1595 | 100 | Plus |
X | 23542271 | X | 13384465..13384670 | 240..35 | 460 | 81.6 | Minus |
3R | 32079331 | 3R | 10786155..10786245 | 331..421 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:44:11 has no hits.
BO28742.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:37 Download gff for
BO28742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RA | 150..554 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:16 Download gff for
BO28742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RA | 149..553 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:55 Download gff for
BO28742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RA | 149..553 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:55 Download gff for
BO28742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10784607..10784923 | 17..333 | 100 | -> | Plus |
3R | 10786158..10786245 | 334..423 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:16 Download gff for
BO28742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6610329..6610645 | 17..333 | 100 | -> | Plus |
arm_3R | 6611880..6611967 | 334..423 | 97 | | Plus |
BO28742.pep Sequence
Translation from 16 to 439
> BO28742.pep
MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRS
GSGRYRSRSPRRSRSPRSRSFSRDRRSRSDSRDRHASFLDH
BO28742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-PA | 135 | CG17136-PA | 1..135 | 1..135 | 715 | 100 | Plus |
Rbp1-like-PC | 158 | CG1987-PC | 1..158 | 1..135 | 591 | 75.5 | Plus |
Rbp1-like-PA | 158 | CG1987-PA | 1..158 | 1..135 | 591 | 75.5 | Plus |
Rbp1-PD | 144 | CG17136-PD | 1..121 | 1..121 | 580 | 90.9 | Plus |
Rbp1-like-PB | 247 | CG1987-PB | 1..101 | 1..101 | 479 | 88.1 | Plus |