BO28743.complete Sequence
604 bp assembled on 2011-09-14
GenBank Submission: KX794379
> BO28743.complete
GAAGTTATCAGTCGACATGGAGGAATTTAATTCGAGCGGATCAGTAGTTA
ATGGTACAGGATCTACGGAAGTTCCTCAATCTAATGCTGAAGTTATAAGG
GGACAAATATTTGAAGTTGGTCCTAGGTATATTAAACTCGCCTATATAGG
TGAAGGAGCTTATGGCATGGTTGTGTCTGCGGATGACACGCTAACAAACC
AAAGAGTTGCAATAAAAAAAATATCGCCCTTTGAACACCAAACTTATTGT
CAAAGGACTCTCAGAGAAATAACCATATTGACCAGATTTAAACATGAAAA
CATTATTGATATTCGAGATATTCTTCGAGTTGATAGCATAGACCAAATGA
GAGATGTTTATATTGTACAGTGTTTGATGGAGACTGATTTGTATAAACTA
CTTAAAACACAGGTAATGGTGCTCCCTGATATTTGGTTAAAATTTATTGA
AAGAATAACTACCATTGATATGTGGTGTATTATCTTGGCCATTACTCCAA
ATACCAAGACTGAGTACAATTGTAGGTTGTCGGACATTTTCAATTATGGA
AGTGATTCGCGTTATGCTTTCATGCGGGCTTTAAAAGCAAGCTTTCTAGA
CCAT
BO28743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rl-RA | 573 | CG12559-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
rl-RI | 1131 | CG12559-PI | 1..396 | 17..412 | 1980 | 100 | Plus |
rl-RC | 1131 | CG12559-PC | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rl-RA | 1412 | CG12559-RA | 307..877 | 16..586 | 2855 | 100 | Plus |
rl-RI | 2072 | CG12559-RI | 102..498 | 16..412 | 1985 | 100 | Plus |
rl-RC | 1614 | CG12559-RC | 126..522 | 16..412 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1080331..1080615 | 302..586 | 1425 | 100 | Plus |
2R | 25286936 | 2R | 1072281..1072441 | 16..176 | 805 | 100 | Plus |
2R | 25286936 | 2R | 1076635..1076761 | 175..301 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:19:33 has no hits.
BO28743.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 11:59:23 Download gff for
BO28743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rl-RA | 325..890 | 17..582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:02 Download gff for
BO28743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rl-RA | 308..873 | 17..582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:16 Download gff for
BO28743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rl-RA | 308..873 | 17..582 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:16 Download gff for
BO28743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1072282..1072439 | 17..174 | 100 | -> | Plus |
2R | 1076635..1076761 | 175..301 | 100 | -> | Plus |
2R | 1080331..1080611 | 302..582 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:02 Download gff for
BO28743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 198996..199153 | 17..174 | 100 | -> | Plus |
2RHet | 203349..203475 | 175..301 | 100 | -> | Plus |
2RHet | 207045..207325 | 302..582 | 100 | | Plus |
BO28743.pep Sequence
Translation from 16 to 604
> BO28743.pep
MEEFNSSGSVVNGTGSTEVPQSNAEVIRGQIFEVGPRYIKLAYIGEGAYG
MVVSADDTLTNQRVAIKKISPFEHQTYCQRTLREITILTRFKHENIIDIR
DILRVDSIDQMRDVYIVQCLMETDLYKLLKTQVMVLPDIWLKFIERITTI
DMWCIILAITPNTKTEYNCRLSDIFNYGSDSRYAFMRALKASFLDH
BO28743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rl-PA | 190 | CG12559-PA | 1..190 | 1..190 | 980 | 100 | Plus |
rl-PI | 376 | CG12559-PI | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PC | 376 | CG12559-PC | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PD | 376 | CG12559-PD | 1..132 | 1..132 | 670 | 100 | Plus |
rl-PE | 376 | CG12559-PE | 1..132 | 1..132 | 670 | 100 | Plus |