BO28744.complete Sequence
586 bp assembled on 2011-08-24
GenBank Submission: KX794234
> BO28744.complete
GAAGTTATCAGTCGACATGACGGCCAAGATGAAGCTGCGGTCCCAGCTGC
ATCTGCTCACTGGTTTCATGGCTGGATTCGTGCTGGCCTTCGTGCTCCTC
CTCTACGTCTACGATGTCAGCAGGGTGACGCCCTGCTGGAGCAGCACCTC
CACCATGACCACGGCCACAACGGCCAGGATTGAGGATGGTCCACCACCGC
GCATTCTGTGCATGGTGCTCACCTGTCCGGAGAACGTGCAGAGCCTGGCC
AGAAGTGTCTACGAGACCTGGGGCCAGCGCTGCAGCCGCCTGATCTTCGC
CAGCAGCGAGGACTACGAGCCACTGGGCGTGGTCGGTGTGGTGGAGCCAA
CTGGCGGTGGCTACGAGGATCTGTGGAATAAAACGCGCGAGGGATTCCGA
CACGTTTGGGAGCACTACGCTGGCGACTACGATTGGTTCCTCAAGGCAGA
TGACGATACGTACGTGGTCATGGAGAATCTGCAGCACCTGCTCCGTGGCT
TCGATCCGAATACGCCCGTCTTCTTTGGCTACAAGATGTCGCGATACAAT
GTGCTTCTGCATTTTGAAGCAAGCTTTCTAGACCAT
BO28744.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3119-RB | 555 | CG3119-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
CG3119-RA | 1068 | CG3119-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3119-RB | 682 | CG3119-RB | 46..597 | 17..568 | 2760 | 100 | Plus |
CG3119-RA | 1193 | CG3119-RA | 46..582 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2837344..2837788 | 461..17 | 2225 | 100 | Minus |
2L | 23513712 | 2L | 2837193..2837286 | 553..460 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:44:25 has no hits.
BO28744.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:37 Download gff for
BO28744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3119-RB | 44..595 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:24 Download gff for
BO28744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3119-RB | 46..597 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:01 Download gff for
BO28744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3119-RB | 46..597 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:01 Download gff for
BO28744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2837193..2837286 | 460..553 | 100 | <- | Minus |
2L | 2837346..2837788 | 17..459 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:24 Download gff for
BO28744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2837193..2837286 | 460..553 | 100 | <- | Minus |
arm_2L | 2837346..2837788 | 17..459 | 100 | | Minus |
BO28744.pep Sequence
Translation from 16 to 586
> BO28744.pep
MTAKMKLRSQLHLLTGFMAGFVLAFVLLLYVYDVSRVTPCWSSTSTMTTA
TTARIEDGPPPRILCMVLTCPENVQSLARSVYETWGQRCSRLIFASSEDY
EPLGVVGVVEPTGGGYEDLWNKTREGFRHVWEHYAGDYDWFLKADDDTYV
VMENLQHLLRGFDPNTPVFFGYKMSRYNVLLHFEASFLDH
BO28744.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3119-PB | 184 | CG3119-PB | 1..184 | 1..184 | 997 | 100 | Plus |
CG3119-PA | 355 | CG3119-PA | 1..179 | 1..179 | 970 | 100 | Plus |
C1GalTA-PA | 388 | CG9520-PA | 100..213 | 62..177 | 317 | 47.4 | Plus |
C1GalTA-PC | 388 | CG9520-PC | 100..213 | 62..177 | 317 | 47.4 | Plus |
C1GalTA-PB | 388 | CG9520-PB | 100..213 | 62..177 | 317 | 47.4 | Plus |