BO28745.complete Sequence
613 bp assembled on 2011-08-24
GenBank Submission: KX794370
> BO28745.complete
GAAGTTATCAGTCGACATGATTGGTGTGCCACAATCTTGGATCGAACTCA
GCACAACAGCTGCGATGGCTGGCATCAAGAGCCCCGACAGAATCACTCCG
TTGCCATTCAACAATGGCGAGGAGTACCTGAGACTTCTGCGCGAGGCCCA
GCGCGAGTCGAACCAGTCGAGCCGTGTCGTCTCCTTGGCCAGCTCCCGTC
GTGATACGCCCCGTGATAGCCCCAAGAGTCCACCGAACAGTCCCCAGTCG
GAGCTCTGTCCGGATGATGAGCTCAGAAACGTGTACATCAACTACTGGAC
CAAGGGAGGAGACAAACAGAATGCAGGCAATGAAGATTGGCTGAAGAACT
GGAATCAGCCACCCAGTAGCTGGAACATTGAGGATTCAAGTCGGGATGCC
GGCGACGAGGGCGAGAAAAAGAAGACTAACACAGGCTACTCCATCCGTTT
GAAGCGACTGGGCTCCAACTCGTTGTTCTCCCGCGAAATTCTGTACTCGC
TGCTGGTGACCAACGTCCTGTCCCTGCTGCTGGGAGCTGGATTCGGGCTA
TGGTTGAGCAAGCGTGGCATACTCCTTACCCGTGTGGTCATTGACGCAAG
CTTTCTAGACCAT
BO28745.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RB | 582 | CG5059-PB | 1..579 | 17..595 | 2895 | 100 | Plus |
| CG5059-RA | 606 | CG5059-PA | 41..603 | 33..595 | 2815 | 100 | Plus |
| CG5059-RE | 534 | CG5059-PE | 1..531 | 65..595 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RB | 1344 | CG5059-RB | 28..607 | 16..595 | 2900 | 100 | Plus |
| CG5059-RC | 1905 | CG5059-RC | 605..1169 | 31..595 | 2825 | 100 | Plus |
| CG5059-RE | 1543 | CG5059-RE | 243..806 | 32..595 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516136 | 312..29 | 1375 | 98.9 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 547..364 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 366..303 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515335..20515384 | 595..546 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:45:27 has no hits.
BO28745.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:38 Download gff for
BO28745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 18..596 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:01 Download gff for
BO28745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 29..607 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:30 Download gff for
BO28745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 29..607 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:30 Download gff for
BO28745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515861..20516132 | 33..304 | 100 | <- | Minus |
| 3L | 20517261..20517276 | 17..32 | 100 | | Minus |
| 3L | 20515332..20515383 | 547..597 | 96 | <- | Minus |
| 3L | 20515444..20515623 | 367..546 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 305..366 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:01 Download gff for
BO28745.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508432..20508483 | 547..597 | 96 | <- | Minus |
| arm_3L | 20508544..20508723 | 367..546 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 305..366 | 100 | <- | Minus |
| arm_3L | 20508961..20509232 | 33..304 | 100 | <- | Minus |
| arm_3L | 20510361..20510376 | 17..32 | 100 | | Minus |
BO28745.pep Sequence
Translation from 16 to 613
> BO28745.pep
MIGVPQSWIELSTTAAMAGIKSPDRITPLPFNNGEEYLRLLREAQRESNQ
SSRVVSLASSRRDTPRDSPKSPPNSPQSELCPDDELRNVYINYWTKGGDK
QNAGNEDWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGYSIRLKRLGS
NSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILLTRVVIDASFLDH
BO28745.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-PB | 193 | CG5059-PB | 1..193 | 1..193 | 1008 | 100 | Plus |
| CG5059-PA | 201 | CG5059-PA | 14..201 | 6..193 | 979 | 99.5 | Plus |
| CG5059-PE | 177 | CG5059-PE | 1..177 | 17..193 | 927 | 100 | Plus |
| CG5059-PD | 177 | CG5059-PD | 1..177 | 17..193 | 927 | 100 | Plus |
| CG5059-PC | 177 | CG5059-PC | 1..177 | 17..193 | 927 | 100 | Plus |
