BO28746.complete Sequence
385 bp assembled on 2011-08-24
GenBank Submission: KX799469
> BO28746.complete
GAAGTTATCAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCT
TCCTCCTCTTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATG
CCCAGGTACCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACT
GGAGGAGGTGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGAC
GCACCATCATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTG
GACTTTGGCTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCG
CATGGGTCTGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGAC
GATCCGAGACCGATGTCGCAAGCTTTCTAGACCAT
BO28746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-RC | 354 | CG13094-PC | 1..351 | 17..367 | 1755 | 100 | Plus |
Dh31-RA | 351 | CG13094-PA | 1..348 | 17..367 | 1675 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-RC | 1295 | CG13094-RC | 143..493 | 17..367 | 1755 | 100 | Plus |
Dh31-RA | 1292 | CG13094-RA | 143..490 | 17..367 | 1675 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8492670..8492802 | 367..235 | 665 | 100 | Minus |
2L | 23513712 | 2L | 8492967..8493092 | 234..109 | 630 | 100 | Minus |
2L | 23513712 | 2L | 8493744..8493835 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:42:12 has no hits.
BO28746.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:32 Download gff for
BO28746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RC | 143..493 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:17 Download gff for
BO28746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RC | 143..493 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:09 Download gff for
BO28746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RC | 143..493 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:09 Download gff for
BO28746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8492668..8492802 | 235..369 | 98 | <- | Minus |
2L | 8492967..8493092 | 109..234 | 100 | <- | Minus |
2L | 8493744..8493835 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:17 Download gff for
BO28746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8492668..8492802 | 235..369 | 98 | <- | Minus |
arm_2L | 8492967..8493092 | 109..234 | 100 | <- | Minus |
arm_2L | 8493744..8493835 | 17..108 | 100 | | Minus |
BO28746.pep Sequence
Translation from 16 to 385
> BO28746.pep
MTNRCACFALAFLLFCLLAISSIEAAPMPRYQSNGGYGGAGYNELEEVPD
DLLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAA
ANFAGGPGRRRRSETDVASFLDH
BO28746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-PC | 117 | CG13094-PC | 1..117 | 1..117 | 607 | 100 | Plus |
Dh31-PA | 116 | CG13094-PA | 1..116 | 1..117 | 582 | 98.3 | Plus |