BO28748.complete Sequence
883 bp assembled on 2011-08-24
GenBank Submission: KX797765
> BO28748.complete
GAAGTTATCAGTCGACATGGGCAATGCCGGCTACACTTGCATACGCCGCA
CATTCTGCTGGCTCAACATCATTCTATGGTTATGTAGCTGTGCGTTTTTA
GGAGCGGGACTCTGGTTGCGACTGAGCTACGCGGGATACGCCACTTTGCT
GCCCCAGCACGCAGGTCTGAGTGCGGACACCATCTTCATGGGCATCGGGG
GCACCGGATTTGTGGTCAGCTTCTTTGGCTGCTGCGGCGCCTGGGTGCAA
TCCCGCTGTCTCCTGGTATTGTACTTTATGCTGATTGTAATGCTGTTCAT
GAGCGAGTTCCTGGTTGGCTCCATCGCCTTTCTCTTCCGCGGCGGACTGG
GACGGACTTTGGCCAACGAGCTGCGCTTCGGGATCGAGCGGCATTATAAC
AGCAGCGATCGGGGATCTCTGGTGGCGCCTTCGGTGGCCTCCATTTGGGA
CAGCGTGCAGCAGTCGTTCGAGTGTTGCGGCGTTTCCTCCTACGAGGATT
GGTATGACATTCAGTCGTGGCCAGGCAGGCGCTGGGTGCCAGAGTCCTGC
TGCAGGACCCTCTACGACCAGCGCCAGGTGCTCACCGAAGGATCCGGCGA
CGGAATGATGCGTCCCGACTGCGGCAGATCTGAGAATCCGTCGCTGTGGT
GGGACAAGGGCTGTGCCCACTCGCTGCAGAGCTGGTTCACCGGCCAGCTG
AACGTGGTGGGCGCCGTGGGACTGGGCATCGCCTTTGTCCAGCTGTTCGG
GCTGATCACCTCGATGCTGCTGTTCTGCACGGTGAAGCACAAGCGGGCCT
CGGACACCTACAAGTCATACTCCCCGTCGATTGATCCTCAGACCCGCACC
AGCAGTTGGGAAGATGCAAGCTTTCTAGACCAT
BO28748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp5D-RC | 864 | CG4690-PC | 1..849 | 17..865 | 4245 | 100 | Plus |
| Tsp5D-RB | 852 | CG4690-PB | 1..849 | 17..865 | 4245 | 100 | Plus |
| Tsp5D-RA | 852 | CG4690-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp5D-RC | 1827 | CG4690-RC | 145..993 | 17..865 | 4245 | 100 | Plus |
| Tsp5D-RB | 1827 | CG4690-RB | 145..993 | 17..865 | 4245 | 100 | Plus |
| Tsp5D-RA | 1972 | CG4690-RA | 290..1138 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6069965..6070204 | 865..626 | 1200 | 100 | Minus |
| X | 23542271 | X | 6070521..6070716 | 466..271 | 980 | 100 | Minus |
| X | 23542271 | X | 6070857..6071049 | 271..79 | 965 | 100 | Minus |
| X | 23542271 | X | 6070293..6070454 | 627..466 | 810 | 100 | Minus |
| X | 23542271 | X | 6071805..6071867 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:42:38 has no hits.
BO28748.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:34 Download gff for
BO28748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RB | 145..993 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:32 Download gff for
BO28748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RA | 290..1138 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:18 Download gff for
BO28748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RA | 290..1138 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:18 Download gff for
BO28748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6069962..6070202 | 628..867 | 99 | <- | Minus |
| X | 6070293..6070453 | 467..627 | 100 | <- | Minus |
| X | 6070521..6070715 | 272..466 | 100 | <- | Minus |
| X | 6070857..6071048 | 80..271 | 100 | <- | Minus |
| X | 6071805..6071867 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:32 Download gff for
BO28748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5963995..5964235 | 628..867 | 99 | <- | Minus |
| arm_X | 5964326..5964486 | 467..627 | 100 | <- | Minus |
| arm_X | 5964554..5964748 | 272..466 | 100 | <- | Minus |
| arm_X | 5964890..5965081 | 80..271 | 100 | <- | Minus |
| arm_X | 5965838..5965900 | 17..79 | 100 | | Minus |
BO28748.pep Sequence
Translation from 16 to 883
> BO28748.pep
MGNAGYTCIRRTFCWLNIILWLCSCAFLGAGLWLRLSYAGYATLLPQHAG
LSADTIFMGIGGTGFVVSFFGCCGAWVQSRCLLVLYFMLIVMLFMSEFLV
GSIAFLFRGGLGRTLANELRFGIERHYNSSDRGSLVAPSVASIWDSVQQS
FECCGVSSYEDWYDIQSWPGRRWVPESCCRTLYDQRQVLTEGSGDGMMRP
DCGRSENPSLWWDKGCAHSLQSWFTGQLNVVGAVGLGIAFVQLFGLITSM
LLFCTVKHKRASDTYKSYSPSIDPQTRTSSWEDASFLDH
BO28748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp5D-PC | 287 | CG4690-PC | 1..287 | 1..287 | 1550 | 99 | Plus |
| Tsp5D-PB | 283 | CG4690-PB | 1..283 | 1..283 | 1549 | 100 | Plus |
| Tsp5D-PA | 283 | CG4690-PA | 1..283 | 1..283 | 1549 | 100 | Plus |
| Tsp74F-PB | 236 | CG5492-PB | 71..232 | 66..253 | 235 | 26.6 | Plus |
| Tsp74F-PA | 236 | CG5492-PA | 71..232 | 66..253 | 235 | 26.6 | Plus |
