BO28750.complete Sequence
1645 bp assembled on 2011-09-19
GenBank Submission: KX796583
> BO28750.complete
GAAGTTATCAGTCGACATGAAAGAAACTCTAAGCTCAAAGGTGCCAACAA
GAATAGGAGTAACGTTTGTGTCTGAATCGGATCCAAAGAAAAAGTTCAAA
AGTTCGCCATCAACGTCGAGCTCAACAATATCAACGGCGACAATAACAAG
CACAACAACAACAACAACAACAACCGCATCGCCCCCACCGCCCCAAACTT
CGTATGTGATTAAATGTCTATTGAAGACCGCTCGTTTTATGTGGCAAGTG
ACGACAATACCCTCTAAAATCGGTGATACCATTGGTACCCTGTACCGTTA
TGCTCAGGATTCAGTTGATAGTTTTCTATGCGTAGCTGGCAAGGCCCGTC
GCAAGGAACGCGATGGCGATCAAAATTCAACAGACACCAAATTGTATTTG
GAGGAAAGTGTCCTAGAACGTAAATTACCTGAAGCTGATCTCAAAGCCCT
AGTGGATCTTCCAGCTGGTTTGGACTACAATGAATGGCTAGCGTCACACA
CCCTCGCTCTATTTGAGCACGTGAATTTGGTCTATGGAACTATTAGTGAA
TTTTGTACACAATCCGGTTGCGCTGACATGACCGGACCCGGCAACAGAAC
GTACTTATGGTTCGACGAGAAGGGCAAGAAGACGCGCGTCGCAGCACCAC
AGTACATCGACTATGTGATGACGTTCACCCAGAAGACGGTCAGCGATGAG
TCGATATTCCCAACCAAATACGCCAACGAGTTCCCCGGCTCGTTCGAGTC
GATTGCGCGGAAGATACTACGCTTGCAATTTCATGTGATAGCGCATCTGT
ATGCGGCGCATTTCAGAGAAATCGCGCTGCTCGGCTTGCACACCCATCTA
AATCTGACTTTCGCGCACCTCACCGCACTGCACCGGCGCTTCAATTTGAT
CGACGAGAAGGAGACGGACGTGCTGCGCGACCTTGAGGTGGCCCTGCGCC
TCACCGACGATACCGGTGGATGCCAGGATGCTACCTCCACGACGTCGTCG
GTCCATGACCACTCCCACTCCGGCGATCTCCAGCATCAGTCGCTGCAACA
GCAGCAGCAACACCACAACAGCAGCAGCAACAGCACCTCCTCGGCGGAGG
CGTTTCACGTCAATTCACAAAGCAACAATGGCAGCACATCCGCCTCGGCA
TCGGTATCCCTAATCGATGGCGATGCGGTGGCGCCGCCCATTTGCACGCA
ACCAGAGGCGGGTGCGGGCTGCAAGCCAGCGGGCAGCAGCGGATTGCTGG
GCGGTATACTGGGCGACCTGACCAGCGGCGAATTTGGTGATACAACGCGC
TACTGCACATCGGCAGTTCCTCAGGCGGCGGCAGCAGCGGGTGCGGGTGT
GGGTGGTACAGCGATCGGTGCCACGGATGCTGCCGCATTGAACAACGGCG
CTGGCGCACTACATTTAAACTTTAGCAACAATAATAACAATAATCATAAT
CTGAATCACCATCACCACCATCATCACCACCACGGCCACCATGGCCATCA
TCATGCGGCACAGCAGCAGCAGCAGCACAGTGGACTCATACAGTGCAATG
CGGCGGGCGGCGGAGGGAATGCAACAGGGGTAGCCACGGGCGGAGCAACT
GCAGCAGCGTCCTCGACCACCACGGCAGCAAGCTTTCTAGACCAT
BO28750.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mob2-RE | 1614 | CG11711-PE | 1..1611 | 17..1627 | 8055 | 100 | Plus |
| Mob2-RB | 1614 | CG11711-PB | 1..1611 | 17..1627 | 8055 | 100 | Plus |
| Mob2-RC | 1296 | CG11711-PC | 4..1293 | 338..1627 | 6450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mob2-RE | 1976 | CG11711-RE | 178..1788 | 17..1627 | 8055 | 100 | Plus |
| Mob2-RB | 3466 | CG11711-RB | 129..1739 | 17..1627 | 8055 | 100 | Plus |
| Mob2-RC | 1816 | CG11711-RC | 339..1628 | 338..1627 | 6450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11524484..11525516 | 1627..595 | 5165 | 100 | Minus |
| 3L | 28110227 | 3L | 11527455..11527777 | 339..17 | 1615 | 100 | Minus |
| 3L | 28110227 | 3L | 11527182..11527343 | 500..339 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 11525580..11525676 | 597..501 | 485 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 21..48 | 1423..1450 | 113 | 89.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7059..7086 | 1423..1450 | 113 | 89.3 | Plus |
BO28750.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:16 Download gff for
BO28750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mob2-RB | 121..1731 | 17..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:37 Download gff for
BO28750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mob2-RB | 129..1739 | 17..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:44 Download gff for
BO28750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mob2-RB | 129..1739 | 17..1629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:44 Download gff for
BO28750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11524482..11525513 | 598..1629 | 99 | <- | Minus |
| 3L | 11525580..11525676 | 501..597 | 100 | <- | Minus |
| 3L | 11527182..11527342 | 340..500 | 100 | <- | Minus |
| 3L | 11527455..11527777 | 17..339 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:37 Download gff for
BO28750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11517582..11518613 | 598..1629 | 99 | <- | Minus |
| arm_3L | 11518680..11518776 | 501..597 | 100 | <- | Minus |
| arm_3L | 11520282..11520442 | 340..500 | 100 | <- | Minus |
| arm_3L | 11520555..11520877 | 17..339 | 100 | | Minus |
BO28750.pep Sequence
Translation from 16 to 1645
> BO28750.pep
MKETLSSKVPTRIGVTFVSESDPKKKFKSSPSTSSSTISTATITSTTTTT
TTTASPPPPQTSYVIKCLLKTARFMWQVTTIPSKIGDTIGTLYRYAQDSV
DSFLCVAGKARRKERDGDQNSTDTKLYLEESVLERKLPEADLKALVDLPA
GLDYNEWLASHTLALFEHVNLVYGTISEFCTQSGCADMTGPGNRTYLWFD
EKGKKTRVAAPQYIDYVMTFTQKTVSDESIFPTKYANEFPGSFESIARKI
LRLQFHVIAHLYAAHFREIALLGLHTHLNLTFAHLTALHRRFNLIDEKET
DVLRDLEVALRLTDDTGGCQDATSTTSSVHDHSHSGDLQHQSLQQQQQHH
NSSSNSTSSAEAFHVNSQSNNGSTSASASVSLIDGDAVAPPICTQPEAGA
GCKPAGSSGLLGGILGDLTSGEFGDTTRYCTSAVPQAAAAAGAGVGGTAI
GATDAAALNNGAGALHLNFSNNNNNNHNLNHHHHHHHHHGHHGHHHAAQQ
QQQHSGLIQCNAAGGGGNATGVATGGATAAASSTTTAASFLDH
BO28750.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mob2-PE | 537 | CG11711-PE | 1..537 | 1..537 | 2814 | 100 | Plus |
| Mob2-PB | 537 | CG11711-PB | 1..537 | 1..537 | 2814 | 100 | Plus |
| Mob2-PD | 566 | CG11711-PD | 127..566 | 98..537 | 2276 | 98 | Plus |
| Mob2-PC | 431 | CG11711-PC | 2..431 | 108..537 | 2273 | 100 | Plus |
| Mob2-PA | 728 | CG11711-PA | 297..728 | 106..537 | 2268 | 99.3 | Plus |
