Clone BO28751 Report

Search the DGRC for BO28751

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:287
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptChi-RB
Protein status:BO28751.pep: Imported from assembly
Sequenced Size:1822

Clone Sequence Records

BO28751.complete Sequence

1822 bp assembled on 2011-09-20

GenBank Submission: KX794879

> BO28751.complete
GAAGTTATCAGTCGACATGCAGTGCGACATACAGACAAGCCGACGCGAAT
GCCCGATAGAACCGACCACAGGCATGAATCGTAGGGGTTTGAACGCTGGC
AATACGATGACTTCTCAAGCGAACATTGACGACGGCAGCTGGAAGGCGGT
CTCCGAGGGCGGATCAATGCTGCCCGCGTCCAATTCGGCGGTCCTCAATC
CGGACGGGAGCAACCAGAGCGGCTTCGCGCAGGGCGGCCTGCCGTACAAC
TCGGCCGGGAATCCGTACCCGCCCGCCGGCCAATCCTCGCCAGCCGGCAA
CCAGTCCATCGTGTTCCAGAACTCCAACCAGCCTGGCTCGAACACACCTC
AGTATACCTCCTCACCTGCTCCCTCGGGCTCATCGACACCCGGACCTGTT
GGTGCGCAGAACATTCCCGGCAACTACCCGCAGTCGGCGACGGCGGGCAA
TTTCAATGGTCCAGTTGGCGGGCCCTTCGGCTCGCCATCCTCGGGACTCG
GCCAGTTCAGCCGGCCGGCCAGCTCGGGCACTCCGTTTAACAGTGGCCAG
GCCGGGCACTTCTCATCGCCCACGGTATTCAGCGTTGGCGGGCAATTCAA
TCCGATGCCGCCGGCGTCGCCATTCGGCCACGGAGGCAACCACCCGATGA
TGGGCGGGCCGCAGCAGATGGAACGCATCGACCAGGGCTTCAGGCGGCAC
AATTCCTACTTTAGCCACACGGAACACCGCGTCTTTGAGCTAAACAAGCG
GCTGCAGCAGCGCAACGAGGAGAGCGACAACTGCTGGTGGGACTCGTTTA
CCACGGAGTTCTTCGAGGATGATGCCCGGCTGACCATTCTGTTCTGCCTG
GAGGACGGACCGAAGCGGTACACCATCGGGCGCACGCTCATCCCGCGCTT
CTTCCGCAGCATATACGAGGGCGGCGTTTCGGACCTGTACTTTCAGCTGA
AGCATGCCAAGGAGTCGTTCCACAACACGTCCATCACGTTGGACTGCGAC
CAGTGCACGGTGATCACGCAGCACGGCAAGCCCTTCTTCACGAAGGTCTG
CGCCGACGCAAGACTGATCTTGGAGTTCATGTACGACGACTACATGCGCA
TCAAGTCATGGCACATGACCATCAAGGGACACCGCGAGCTCATTCCAAGG
TCCGTGATCGGCACCAGTCTGCCGCCTGACCCGATGCTGCTAGATCAAAT
AACCAAGAACATCACGCGCGCTGGCATCACCAACTCCACCCTCAACTATC
TGCGCCTCTGCGTCATCCTCGAACCGATGCAGGAGCTGATGTCGCGGCAC
AAGGCGTACGCACTGAGTCCGCGCGACTGCCTGAAGACAACGTTGTTCCA
GAAGTGGCAGCGCATGGTGGCTCCGCCCGGCAAGAAGGATCCGCAACGAC
CACCCAACAAGAGGCGCAAACGGAAGGGCTCCAATTCGGGTGGTGGCAAC
AACTCGAACACTCCGCCTGTGACGAACCAGAAGCGTTCCCCCTCCGGTCC
CAGTTTCTCCCTCTCCTCCCAGGACGTGATGGTGGTGGGCGAGCCGACGC
TGATGGGCGGCGAGTTTGGTGAGGAGGACGAGCGGCTGATCACCCGGCTA
GAGAACACGCAATACGACGGAACCAATGCCGTGGAGCACGATAATCACAC
CGGCTTTGGACACGCCGACTCGCCCATATCCGGCTCGAATCCGTGGAGCA
TCGACCGGGCGGGAGCCATCCCGGCCAGCCCTGGGAACGGAGCTGCCCCG
CAGAACAACGCGAATATATCTGACATAGATAAAAAGAGCCCCATTGTATC
GCAAGCAAGCTTTCTAGACCAT

BO28751.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Chi-RB 1791 CG3924-PB 1..1788 17..1804 8925 99.9 Plus
Chi-RA 1734 CG3924-PA 1..1731 74..1804 8640 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
Chi-RB 2125 CG3924-RB 69..1856 17..1804 8925 99.9 Plus
Chi-RA 2156 CG3924-RA 122..1887 39..1804 8815 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24031807..24033576 1804..35 8820 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 12:45:40 has no hits.

BO28751.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:34 Download gff for BO28751.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 69..1856 17..1806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:19 Download gff for BO28751.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 69..1856 17..1806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:57 Download gff for BO28751.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 69..1856 17..1806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:57 Download gff for BO28751.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24031805..24033572 39..1806 99 <- Minus
2R 24033679..24033700 17..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:19 Download gff for BO28751.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19919328..19921095 39..1806 99 <- Minus
arm_2R 19921202..19921223 17..38 100   Minus

BO28751.pep Sequence

Translation from 16 to 1822

> BO28751.pep
MQCDIQTSRRECPIEPTTGMNRRGLNAGNTMTSQANIDDGSWKAVSEGGS
MLPASNSAVLNPDGSNQSGFAQGGLPYNSAGNPYPPAGQSSPAGNQSIVF
QNSNQPGSNTPQYTSSPAPSGSSTPGPVGAQNIPGNYPQSATAGNFNGPV
GGPFGSPSSGLGQFSRPASSGTPFNSGQAGHFSSPTVFSVGGQFNPMPPA
SPFGHGGNHPMMGGPQQMERIDQGFRRHNSYFSHTEHRVFELNKRLQQRN
EESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRYTIGRTLIPRFFRSIY
EGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVCADARL
ILEFMYDDYMRIKSWHMTIKGHRELIPRSVIGTSLPPDPMLLDQITKNIT
RAGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRM
VAPPGKKDPQRPPNKRRKRKGSNSGGGNNSNTPPVTNQKRSPSGPSFSLS
SQDVMVVGEPTLMGGEFGEEDERLITRLENTQYDGTNAVEHDNHTGFGHA
DSPISGSNPWSIDRAGAIPASPGNGAAPQNNANISDIDKKSPIVSQASFL
DH

BO28751.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Chi-PB 596 CG3924-PB 1..596 1..596 3215 100 Plus
Chi-PA 577 CG3924-PA 1..577 20..596 3109 100 Plus