BO28752.complete Sequence
1621 bp assembled on 2011-09-19
GenBank Submission: KX798762
> BO28752.complete
GAAGTTATCAGTCGACATGCCCTTTCGACGCAGCAGTCTGAATCATCGGC
ATCGCGATGGCCATGTTTTGGTATGGAATCAGAGGAATCTCCACGAATCT
CTGGAGCAACAGCCGCAGAGATGCTTTGCCACCCGGTACTTTGTGACCTT
TATGCTTTTCCTGGGCATGGCCAATGCCTATGTGATGCGCACCAACATGT
CGGTGGCCATTGTGGCCATGGTGAACCACACGGCCATCAAGTCTGGAGAG
GCAGAGGAGTACGATGATGAGTGCGGAGATCGGGATATTCCTATTGATGA
CTCTCAGGATGGCGAGTTCGCCTGGAGCTCAGCTCTGCAGGGCTACATCT
TGTCGTCCTTCTTCTATGGCTATGTCATCACCCAGATTCCCTTTGGCATA
TTGGCCAAGAAGTACGGTTCCCTGCGCTTCCTCGGCTACGGCATGTTGAT
CAACTCCGTGTTTGCCTTCCTGGTTCCGGTGGCTGCCCGCGGTGGAGGTG
TTTGGGGTCTGTGCGCCGTGCGTTTCATCCAAGGTCTAGGTGAGGGTCCC
ATCGTGCCCTGCACCCACGCCATGTTGGCCAAATGGATTCCGCCCAACGA
AAGGTCACGAATGGGTGCCGCCGTGTATGCGGGTGCACAGTTTGGAACCA
TCATCTCTATGCCACTTTCCGGCCTGCTGGCTGAATACGGATTCGATGGC
GGCTGGCCGTCGATCTTCTATGTGTTTGGAATTGTGGGTACCGTCTGGTC
CATCGCCTTCCTGATCTTCGTGCACGAGGATCCCTCTTCACATCCCACTA
TTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCTCTGGGGAACTGAT
GTTGTTAAGAGCCCTCCCATTCCCTTCAAGGCTATCATCAAGTCGCTGCC
CTTCTACGCCATTCTGTTCGCCCACATGGGTCACAACTACGGCTATGAGA
CTCTGATGACCGAGCTGCCCACCTACATGAAGCAGGTGCTCCGCTTCTCC
CTGAAGTCGAACGGTCTGCTCAGCTCCCTGCCCTACTTGGCCATGTGGCT
CTTCTCCATGTTCATCTCGGTGGTCGCCGATTGGATGATTAGCTCGAAGA
GATTCTCGCACACGGCCACCAGGAAGCTGATCAACAGTATTGGCCAGTAT
GGACCGGGAGTCGCCCTAATCGCCGCCTCCTACACGGGCTGCGACAGAGC
ACTGACCTTGGCCATCCTCACCATCGGAGTGGGTCTTAATGGAGGTATCT
ACTCCGGCTTCAAGATCAACCACTTGGACCTCACACCGCGTTTCGCCGGC
TTCCTAATGTCGATCACTAACTGCTCTGCCAATTTGGCTGGTCTCTTAGC
GCCCATTGCTGCAGGTCACCTCATTTCTGATCCCAGCAAGCCCATGATGG
GTCAGTGGCAGATCGTGTTCTTCATCGCTGCCTTTGTGTACATCATTTGC
GGTACCTTCTACAACATCTTCGGATCCGGTGAGCGTCAGTACTGGGACAA
TCCGGAGGACGATGAGCAGAAGCCGGCCCTCCAGACGACCGTCACCACCT
CCCCAGCGAGGCTGAGCAACGGCAGCACGGCACCAGCGGCCATCTCGAGT
TCCGCAAGCTTTCTAGACCAT
BO28752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RB | 1590 | CG8098-PB | 1..1587 | 17..1603 | 7920 | 99.9 | Plus |
| Picot-RD | 1551 | CG8098-PD | 65..1548 | 120..1603 | 7405 | 99.9 | Plus |
| Picot-RC | 1551 | CG8098-PC | 65..1548 | 120..1603 | 7405 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RB | 2333 | CG8098-RB | 310..1896 | 17..1603 | 7920 | 99.9 | Plus |
| Picot-RD | 2870 | CG8098-RD | 950..2433 | 120..1603 | 7405 | 99.9 | Plus |
| Picot-RC | 2367 | CG8098-RC | 447..1930 | 120..1603 | 7405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16656631..16657194 | 859..296 | 2805 | 99.8 | Minus |
| 2R | 25286936 | 2R | 16656036..16656568 | 1390..858 | 2665 | 100 | Minus |
| 2R | 25286936 | 2R | 16655760..16655974 | 1603..1389 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 16657263..16657439 | 296..120 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 16658746..16658849 | 120..17 | 520 | 100 | Minus |
| X | 23542271 | X | 4784486..4784872 | 335..721 | 465 | 74.7 | Plus |
| X | 23542271 | X | 4784336..4784422 | 152..238 | 270 | 87.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:19 has no hits.
BO28752.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:37 Download gff for
BO28752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RB | 305..1891 | 17..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:35 Download gff for
BO28752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RB | 310..1896 | 17..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:03 Download gff for
BO28752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RB | 310..1896 | 17..1605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:03 Download gff for
BO28752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16655758..16655972 | 1391..1605 | 99 | <- | Minus |
| 2R | 16656036..16656566 | 860..1390 | 100 | <- | Minus |
| 2R | 16656631..16657194 | 296..859 | 99 | <- | Minus |
| 2R | 16657264..16657439 | 120..295 | 100 | <- | Minus |
| 2R | 16658747..16658849 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:35 Download gff for
BO28752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12546252..12546354 | 17..119 | 100 | | Minus |
| arm_2R | 12543263..12543477 | 1391..1605 | 99 | <- | Minus |
| arm_2R | 12543541..12544071 | 860..1390 | 100 | <- | Minus |
| arm_2R | 12544136..12544699 | 296..859 | 99 | <- | Minus |
| arm_2R | 12544769..12544944 | 120..295 | 100 | <- | Minus |
BO28752.pep Sequence
Translation from 16 to 1621
> BO28752.pep
MPFRRSSLNHRHRDGHVLVWNQRNLHESLEQQPQRCFATRYFVTFMLFLG
MANAYVMRTNMSVAIVAMVNHTAIKSGEAEEYDDECGDRDIPIDDSQDGE
FAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFA
FLVPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMG
AAVYAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLI
FVHEDPSSHPTIDEREKKYINDSLWGTDVVKSPPIPFKAIIKSLPFYAIL
FAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLLSSLPYLAMWLFSMFI
SVVADWMISSKRFSHTATRKLINSIGQYGPGVALIAASYTGCDRALTLAI
LTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAG
HLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQYWDNPEDDE
QKPALQTTVTTSPARLSNGSTAPAAISSSASFLDH
BO28752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-PB | 529 | CG8098-PB | 1..529 | 1..529 | 2792 | 100 | Plus |
| Picot-PD | 516 | CG8098-PD | 14..516 | 27..529 | 2603 | 98.6 | Plus |
| Picot-PC | 516 | CG8098-PC | 14..516 | 27..529 | 2603 | 98.6 | Plus |
| Picot-PA | 516 | CG8098-PA | 14..516 | 27..529 | 2603 | 98.6 | Plus |
| CG6978-PA | 479 | CG6978-PA | 33..479 | 32..492 | 1475 | 60.7 | Plus |
