BO28756.complete Sequence
1375 bp assembled on 2011-08-24
GenBank Submission: KX796591
> BO28756.complete
GAAGTTATCAGTCGACATGATGAACTTCTCCGCGTTCGGCGGCCCCTTCT
CCGGCATCCACCAATTTGCCGCTAAATTCGACGCCCAGACGCCGGGCGCC
TTCGGCACGCCCCCCGCGGCTGCCGCGAATGCAGCAGCCGCAGCGGCAGC
GGCCGGCACCGATAACCATGTGCAGCGATATCAGACCAATGGCAATCACT
TTAATCAGAATGTGCCCAACGTTTCGGCTGCCAACAACATGCAATATGGC
CAGAATATCTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCT
CAATGCAGCCGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCG
AACGTGACCGGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAAC
CAATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTC
ACACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGT
ACTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGC
ACCAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAA
CAACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATG
GCGGTCACATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAAC
GGAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGG
TGGCGCCGGCGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCA
GCGGCGGCACAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCA
CCAAAGGAGAAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAA
GGCGCTGGATGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCT
ACCCGGATCGCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAG
CGGCGCTTCGTCTGCGACATCTGCAATGCGGCGCTGAAGCGCAAGGACCA
CCTGACCAGGCACAAGCTCTCCCACATACCGGACAGGCCGCATGTGTGCA
ATATCTGCATGAAGTCCTTCAAGCGCAAGGAGCAGCTCACTCTGCACATT
GTCATCCATTCCGGCGAGAAGAAGCATGTTTGCATTGAGTGTGGAAAAGG
TTTCTATCGCAAGGATCACTTGCGCAAGCACACACGATCGCACATCGCCC
GGCGTGTCAAGTCGGAGGTGTCGGCGCAGAACGTTAACGGATCCGCCGGA
GGCGGTGGCGGCGGTGGAGGCGGCAACAGTGCGCAGAGCAACGCGCTGCA
CGGCTCCGCAAGCTTTCTAGACCAT
BO28756.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RL | 1368 | CG6930-PL | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| l(3)neo38-RK | 1344 | CG6930-PK | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| l(3)neo38-RC | 1344 | CG6930-PC | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RL | 2247 | CG6930-RL | 672..2015 | 14..1357 | 6720 | 100 | Plus |
| l(3)neo38-RK | 1611 | CG6930-RK | 36..1379 | 14..1357 | 6720 | 100 | Plus |
| l(3)neo38-RC | 2247 | CG6930-RC | 672..2015 | 14..1357 | 6720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11769370..11770105 | 1102..367 | 3680 | 100 | Minus |
| 3R | 32079331 | 3R | 11777474..11777681 | 221..14 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 11768843..11769002 | 1357..1198 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 11771154..11771301 | 368..221 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 11769056..11769154 | 1201..1103 | 495 | 100 | Minus |
| 3L | 28110227 | 3L | 11603938..11604196 | 1003..1261 | 470 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:47:44 has no hits.
BO28756.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:43 Download gff for
BO28756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RC | 672..2012 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:26 Download gff for
BO28756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RC | 675..2015 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:33 Download gff for
BO28756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RC | 675..2015 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:33 Download gff for
BO28756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11769058..11769154 | 1103..1199 | 100 | <- | Minus |
| 3R | 11768840..11769000 | 1200..1359 | 98 | <- | Minus |
| 3R | 11769370..11770103 | 369..1102 | 100 | <- | Minus |
| 3R | 11771154..11771300 | 222..368 | 100 | <- | Minus |
| 3R | 11777474..11777678 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:26 Download gff for
BO28756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7594562..7594722 | 1200..1359 | 98 | <- | Minus |
| arm_3R | 7594780..7594876 | 1103..1199 | 100 | <- | Minus |
| arm_3R | 7595092..7595825 | 369..1102 | 100 | <- | Minus |
| arm_3R | 7596876..7597022 | 222..368 | 100 | <- | Minus |
| arm_3R | 7603196..7603400 | 17..221 | 100 | | Minus |
BO28756.pep Sequence
Translation from 16 to 1375
> BO28756.pep
MMNFSAFGGPFSGIHQFAAKFDAQTPGAFGTPPAAAANAAAAAAAAGTDN
HVQRYQTNGNHFNQNVPNVSAANNMQYGQNISIPYSQPQGDLNFLNAAAA
ADHKGKIHPKIERDREEVLNQQILQNVNQSWQTLANTANTVDYSSHLLSA
TLPISIQHFLKYSETIKKESTGDVLKNGTNLASLALGGVALTPSNNGANG
GHHNGLVGMDHGGHMTNMTDANGAALTNGASNGVNGNANGTVTNGGAGAV
SSSGSVGTTNASGGTGTASGKKTKKKKPPKEKKPRPKPGEIRETKALDGS
TLYCCPECQMAYPDRSLIEQHVISHAVERRFVCDICNAALKRKDHLTRHK
LSHIPDRPHVCNICMKSFKRKEQLTLHIVIHSGEKKHVCIECGKGFYRKD
HLRKHTRSHIARRVKSEVSAQNVNGSAGGGGGGGGGNSAQSNALHGSASF
LDH
BO28756.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-PL | 455 | CG6930-PL | 1..447 | 1..447 | 2369 | 100 | Plus |
| l(3)neo38-PK | 447 | CG6930-PK | 1..447 | 1..447 | 2369 | 100 | Plus |
| l(3)neo38-PC | 447 | CG6930-PC | 1..447 | 1..447 | 2369 | 100 | Plus |
| l(3)neo38-PB | 447 | CG6930-PB | 1..447 | 1..447 | 2369 | 100 | Plus |
| l(3)neo38-PD | 434 | CG6930-PD | 1..434 | 1..447 | 2275 | 97.1 | Plus |
