BO28757.complete Sequence
835 bp assembled on 2011-08-24
GenBank Submission: KX795122
> BO28757.complete
GAAGTTATCAGTCGACATGTGGTTCGCCATTTCTCTGTTTGCCATCTTGG
CCGTTTGCGGGTTGGCCGGCCGCAGGTGGGGTCGCTACCTCTATCTGCAC
TACGGCCGCCACCTGCTGCCGCGCTCCCTCCTCTCGGCCAAGAACCGCGC
GCCCACGCCCCCTCTCTCGCCCACCAAGGACGACCAGAGCCTGGAGGCTC
TCCTCGACGAGAGCGGCGAAATGCACGAAACGGTGCTGTCAATGAGCACA
GATGAATATCGCAAGACCTCGCTCTTTGCCACCGGTTCCTTCGACCTGGA
CTTCCCCATACCAGACCTGATCGGCAAGACAGAAATCCTTACAGAGGAGC
ATCGCGAGAAGCTCTGTTCACATCTGCCGGCTAGAGCCGAGGGATACTCC
TGGTCCCTGATCTTCAGCACCTCACAACATGGTTTCGCACTGAACTCCCT
GTACCGCAAAATGGCGCGTCTGGAGAGTCCAGTTCTGATTGTCATTGAGG
ATACGGAGCACAACGTATTTGGTGCCCTCACCTCCTGCTCACTGCATGTG
TCGGATCACTTTTACGGCACCGGTGAGTCCCTGCTCTACAAGTTTAACCC
CAGCTTCAAGGTGTTCCATTGGACTGGCGAGAATATGTACTTCATCAAAG
GAAACATGGAGAGCCTTTCGATTGGCGCTGGAGACGGTCGTTTTGGCCTG
TGGCTGGATGGTGATCTGAACCAGGGACGATCGCAACAGTGCAGCACATA
CGGCAATGAGCCTCTGGCGCCACAAGAAGACTTTGTTATCAAAACACTCG
AATGCTGGGCATTTGTTGCAAGCTTTCTAGACCAT
BO28757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RC | 804 | CG32464-PC | 1..801 | 17..817 | 4005 | 100 | Plus |
| mtd-RI | 642 | CG32464-PI | 50..639 | 228..817 | 2935 | 99.8 | Plus |
| mtd-RAA | 2616 | CG32464-PAA | 2028..2613 | 232..817 | 2930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RC | 2303 | CG32464-RC | 498..1300 | 15..817 | 4015 | 100 | Plus |
| mtd-RI | 4838 | CG32464-RI | 415..1004 | 228..817 | 2935 | 99.8 | Plus |
| mtd-RAA | 3789 | CG32464-RA | 2201..2786 | 232..817 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5282662..5282882 | 235..15 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 5274149..5274318 | 684..515 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 5274732..5274895 | 517..354 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 5273950..5274082 | 817..685 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 5274966..5275088 | 354..232 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:49:31 has no hits.
BO28757.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:44 Download gff for
BO28757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)82Fd-RC | 476..1276 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:32 Download gff for
BO28757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RC | 500..1300 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:22 Download gff for
BO28757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RC | 500..1300 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:22 Download gff for
BO28757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5274966..5275087 | 233..354 | 100 | <- | Minus |
| 3R | 5273948..5274082 | 685..819 | 98 | <- | Minus |
| 3R | 5274149..5274318 | 515..684 | 100 | <- | Minus |
| 3R | 5274735..5274894 | 355..514 | 100 | <- | Minus |
| 3R | 5282665..5282880 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:32 Download gff for
BO28757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1099670..1099804 | 685..819 | 98 | <- | Minus |
| arm_3R | 1099871..1100040 | 515..684 | 100 | <- | Minus |
| arm_3R | 1100457..1100616 | 355..514 | 100 | <- | Minus |
| arm_3R | 1100688..1100809 | 233..354 | 100 | <- | Minus |
| arm_3R | 1108387..1108602 | 17..232 | 100 | | Minus |
BO28757.pep Sequence
Translation from 16 to 835
> BO28757.pep
MWFAISLFAILAVCGLAGRRWGRYLYLHYGRHLLPRSLLSAKNRAPTPPL
SPTKDDQSLEALLDESGEMHETVLSMSTDEYRKTSLFATGSFDLDFPIPD
LIGKTEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMA
RLESPVLIVIEDTEHNVFGALTSCSLHVSDHFYGTGESLLYKFNPSFKVF
HWTGENMYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPL
APQEDFVIKTLECWAFVASFLDH
BO28757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-PC | 267 | CG32464-PC | 1..267 | 1..267 | 1426 | 100 | Plus |
| mtd-PA | 210 | CG32464-PA | 16..210 | 73..267 | 1043 | 100 | Plus |
| mtd-PI | 213 | CG32464-PI | 19..213 | 73..267 | 1043 | 100 | Plus |
| mtd-PQ | 192 | CG32464-PQ | 1..192 | 76..267 | 1031 | 100 | Plus |
| mtd-PH | 192 | CG32464-PH | 1..192 | 76..267 | 1031 | 100 | Plus |
