BO28759.complete Sequence
670 bp assembled on 2011-08-24
GenBank Submission: KX797327
> BO28759.complete
GAAGTTATCAGTCGACATGGGAGCTTTGTTTGGAAAAACCAGCAAAAAGA
CGGCTCCTAGTCGGATCACCGACCAGGACAAGGCGGTTCTGCAATTGAAG
CAACAGAGGGATCGTCTGAAGCAGTACCAAAAACGCATCGAGACGCAGTT
GGAGAATGATCGCCTCCTGGCAAGGAAGTGCCTACAGCAAGGTCGCAAGG
ACCGGGCCAAGCTGCTGCTGCGCAAGAAGAAGTACCAGGAGAGTCTGCTG
ACCAATGCCGACAAACAGCTGGAAAACCTGGAGAAGCTGGCTGCGGACAT
TGAGTTCGCCCAGGTGGAGATGAAGGTGCTGGACGGCCTCAAAGCGGGCA
ATGCTGCTCTGAAGAAGGTGCACGAAATGCTTGACATCGACGAAGTTGAG
CGAATCATGGACGAGACACGCGAGGGCATCGAAAAGCAGCAGGAAATAGA
CGCCATACTGACGGATGTGCTGACCACGCAGGACGAGGAGGACGTTTTGG
CCGAGCTGGATGCCCTGGAGGCGGAGGAAGAGCAGCAGAAGGGTGCACAG
CTGCCGGATGTGCCCACCGAAGATCTGCCCATTCCCGCTGAGATCGAGTC
CGTCGAGGAGCCGGCAAAGACCAAAGCAACCAAGAAAGTCCTGGTGGAGG
CAGCAAGCTTTCTAGACCAT
BO28759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps20-RC | 639 | CG4071-PC | 1..636 | 17..652 | 3180 | 100 | Plus |
| Vps20-RA | 639 | CG4071-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps20-RC | 899 | CG4071-RC | 150..786 | 16..652 | 3185 | 100 | Plus |
| Vps20-RA | 772 | CG4071-RA | 23..659 | 16..652 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22608856..22609306 | 202..652 | 2255 | 100 | Plus |
| 2R | 25286936 | 2R | 22608683..22608793 | 91..201 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 22608543..22608618 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:45:42 has no hits.
BO28759.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:39 Download gff for
BO28759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps20-RA | 12..647 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:13 Download gff for
BO28759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps20-RA | 24..659 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:37 Download gff for
BO28759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps20-RA | 24..659 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:37 Download gff for
BO28759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22608544..22608618 | 17..91 | 100 | -> | Plus |
| 2R | 22608684..22608793 | 92..201 | 100 | -> | Plus |
| 2R | 22608856..22609306 | 202..654 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:13 Download gff for
BO28759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18496049..18496123 | 17..91 | 100 | -> | Plus |
| arm_2R | 18496189..18496298 | 92..201 | 100 | -> | Plus |
| arm_2R | 18496361..18496811 | 202..654 | 99 | | Plus |
BO28759.pep Sequence
Translation from 16 to 670
> BO28759.pep
MGALFGKTSKKTAPSRITDQDKAVLQLKQQRDRLKQYQKRIETQLENDRL
LARKCLQQGRKDRAKLLLRKKKYQESLLTNADKQLENLEKLAADIEFAQV
EMKVLDGLKAGNAALKKVHEMLDIDEVERIMDETREGIEKQQEIDAILTD
VLTTQDEEDVLAELDALEAEEEQQKGAQLPDVPTEDLPIPAEIESVEEPA
KTKATKKVLVEAASFLDH
BO28759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps20-PC | 212 | CG4071-PC | 1..212 | 1..212 | 1040 | 100 | Plus |
| Vps20-PA | 212 | CG4071-PA | 1..212 | 1..212 | 1040 | 100 | Plus |
| shrb-PA | 226 | CG8055-PA | 5..211 | 2..211 | 202 | 31.8 | Plus |
| CG5498-PB | 448 | CG5498-PB | 239..400 | 17..180 | 156 | 25.9 | Plus |
