BO28760.complete Sequence
847 bp assembled on 2011-08-24
GenBank Submission: KX796952
> BO28760.complete
GAAGTTATCAGTCGACATGCTGAAGGGTTACAAGACGGATGAGGACAAGA
AGGTGAAGCGACTGTACCACCAACGCTATCGCACAGAGTGGGAGAAATAT
CCGGAGCTCTCCAGCTGGCTGGCGTCTAGTAATGACGGTTACTCGGCGCA
CTGCAAGATCTGCGACATCAATGTCCTCGCCAGACTAGCGTCCATCAAGC
AGCACCTCGCAACGCGGAAACACCAGGAAAGTTTCAAGTACCACAACATT
CTTGCCAAGAATATGATTAAGGGTGAACTTGTCAAAGATGAGCATGACCC
AGACTTGGAGGCCTCCATAATTTCACCCAAAGCAAAGCCCAAAGCCAAAT
CAAAGACCTATCCAAGGCAAAAGCCAAGGAGCAAAATGCAGCCAAAGATC
AAGAACGACACGAAGGTGGAGAGCATGGAGGAGGAGACGGAGGAGGACGA
AATCGCCTCGAACGACTCAATCCTGGATGATTTACTCAGAACAGATCAGC
CCTATCAAGAGCAAGAATTTGAGGTTGAGAACGAGTTCCTCGAAGTACAA
CAGAATGAAACAGATCTCCAGGACCAAGAGGTGGTCTACGAGGAAGAGAT
GATACAGCTCAAGCCGGAAGATACGGAGATTAATAACGAATACCAAGTCG
ACGCGATGACGGAAGACACCATTATTAGTGAATTTGACTTGTTTGGCAAG
AGTTTGGCTCTGCAGCTGAACAACATGGACCTGGAGGACGCACTAATGTG
CCAGGAGCGTCTGCAGGTGGTCCTAACGGAATTTCGCCTGAAGGTGCTCA
AGCGCAAGAGAGAGCAAGCACGATCTTCGGCAAGCTTTCTAGACCAT
BO28760.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)05714-RB | 816 | CG8886-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
l(2)05714-RC | 783 | CG8886-PC | 209..780 | 258..829 | 2860 | 100 | Plus |
l(2)05714-RA | 783 | CG8886-PA | 209..780 | 258..829 | 2860 | 100 | Plus |
l(2)05714-RC | 783 | CG8886-PC | 1..210 | 17..226 | 1050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)05714-RB | 1082 | CG8886-RB | 190..1002 | 17..829 | 4065 | 100 | Plus |
l(2)05714-RC | 1089 | CG8886-RC | 438..1009 | 258..829 | 2860 | 100 | Plus |
l(2)05714-RA | 1049 | CG8886-RA | 398..969 | 258..829 | 2860 | 100 | Plus |
l(2)05714-RC | 1089 | CG8886-RC | 230..439 | 17..226 | 1050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4970215..4970786 | 829..258 | 2860 | 100 | Minus |
2L | 23513712 | 2L | 4971054..4971296 | 259..17 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:46:01 has no hits.
BO28760.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:40 Download gff for
BO28760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)05714-RB | 158..970 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:23 Download gff for
BO28760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)05714-RB | 158..970 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:46 Download gff for
BO28760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)05714-RB | 190..1002 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:46 Download gff for
BO28760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4970213..4970784 | 260..831 | 99 | <- | Minus |
2L | 4971054..4971296 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:23 Download gff for
BO28760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4970213..4970784 | 260..831 | 99 | <- | Minus |
arm_2L | 4971054..4971296 | 17..259 | 100 | | Minus |
BO28760.pep Sequence
Translation from 16 to 847
> BO28760.pep
MLKGYKTDEDKKVKRLYHQRYRTEWEKYPELSSWLASSNDGYSAHCKICD
INVLARLASIKQHLATRKHQESFKYHNILAKNMIKGELVKDEHDPDLEAS
IISPKAKPKAKSKTYPRQKPRSKMQPKIKNDTKVESMEEETEEDEIASND
SILDDLLRTDQPYQEQEFEVENEFLEVQQNETDLQDQEVVYEEEMIQLKP
EDTEINNEYQVDAMTEDTIISEFDLFGKSLALQLNNMDLEDALMCQERLQ
VVLTEFRLKVLKRKREQARSSASFLDH
BO28760.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)05714-PB | 271 | CG8886-PB | 1..271 | 1..271 | 1394 | 100 | Plus |
l(2)05714-PC | 260 | CG8886-PC | 1..260 | 1..271 | 1314 | 95.9 | Plus |
l(2)05714-PA | 260 | CG8886-PA | 1..260 | 1..271 | 1314 | 95.9 | Plus |