BO28761.complete Sequence
1036 bp assembled on 2011-08-24
GenBank Submission: KX799198
> BO28761.complete
GAAGTTATCAGTCGACATGTACGAACTGAAGACTCTGCTGCCGCAATTCG
ACATAAAGCTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCG
GCGGATTCCTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTC
CACATCATCATGCAAATTGGAGGCCAACAGGATCGACAGAACGGGACGAA
ACGCAGCCACATGTGCACTTGATTTGGACTCTTTAGGCCGACAAATACAG
CGACTGCTAAAGGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGGT
TCTCAAGCAGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCGG
GACTTGGTGTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAAT
GGTGGATTAAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATCC
CAACTTCATACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAATC
TGTACACTATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACATT
GGACCAGCAGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAAA
CCCTGCTTTGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAAC
ACACCGAGATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGAG
GTGAACATCATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTTA
TGAGGGCTCTCCGCTCTGCAATGAGATCGACCTTGTCCTGGACATTTGCT
ACCAACTGCTGCGCTGCAACACGCACAAAACGCAGGTGGCCATGGTGCGC
CTGCTGGACAAGCGACTGCAGAAGCAGCAGTATTTCGGTGGATCCCAGAT
GTCGGTGGCGGATGTCGGTGTCTACAGCTCACTGATACGCATGCCAGCTG
TTACCGAGAAGGATCTGACGCCTGCGCTAGTGGCTTGGAGAAAAAGGGCC
AAGCTCGTGGTTCAAATTGCAAGCTTTCTAGACCAT
BO28761.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-RA | 1005 | CG12304-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
| CG12304-RB | 906 | CG12304-PB | 148..903 | 263..1018 | 3780 | 100 | Plus |
| CG12304-RB | 906 | CG12304-PB | 1..147 | 17..163 | 735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-RA | 1150 | CG12304-RA | 98..1099 | 17..1018 | 5010 | 100 | Plus |
| CG12304-RB | 1051 | CG12304-RB | 245..1000 | 263..1018 | 3780 | 100 | Plus |
| CG12304-RB | 1051 | CG12304-RB | 98..244 | 17..163 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15584923..15585296 | 645..1018 | 1870 | 100 | Plus |
| 3L | 28110227 | 3L | 15584638..15584869 | 414..645 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 15584285..15584441 | 261..417 | 785 | 100 | Plus |
| 3L | 28110227 | 3L | 15583735..15583881 | 17..163 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 15583997..15584096 | 164..263 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:50:04 has no hits.
BO28761.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:45 Download gff for
BO28761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RA | 93..1094 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:50 Download gff for
BO28761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RA | 98..1099 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:38 Download gff for
BO28761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RA | 98..1099 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:38 Download gff for
BO28761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15583735..15583881 | 17..163 | 100 | -> | Plus |
| 3L | 15583997..15584095 | 164..262 | 100 | -> | Plus |
| 3L | 15584287..15584439 | 263..415 | 100 | -> | Plus |
| 3L | 15584640..15584868 | 416..644 | 100 | -> | Plus |
| 3L | 15584923..15585296 | 645..1020 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:50 Download gff for
BO28761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15576835..15576981 | 17..163 | 100 | -> | Plus |
| arm_3L | 15577097..15577195 | 164..262 | 100 | -> | Plus |
| arm_3L | 15577387..15577539 | 263..415 | 100 | -> | Plus |
| arm_3L | 15577740..15577968 | 416..644 | 100 | -> | Plus |
| arm_3L | 15578023..15578396 | 645..1020 | 99 | | Plus |
BO28761.pep Sequence
Translation from 16 to 1036
> BO28761.pep
MYELKTLLPQFDIKLPTCMYPLKNVSLAADSLASGSSTSASTSASTSSCK
LEANRIDRTGRNAATCALDLDSLGRQIQRLLKDDTASVAARQEKVLKQLE
ELKAQLGQIRAGLGVCGKTFQHTTAFQNGGLKEVPLQDVVINGHPNFIPY
ALLALKNAWRNLYTIDVKTFTHSTMADIGPAAREFEANLAKVPVNPALPK
ISVTLIWKNCEHTEMISSPTMYVPIYGEVNIIRYLGRVGPAEYRYEGSPL
CNEIDLVLDICYQLLRCNTHKTQVAMVRLLDKRLQKQQYFGGSQMSVADV
GVYSSLIRMPAVTEKDLTPALVAWRKRAKLVVQIASFLDH
BO28761.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-PA | 334 | CG12304-PA | 1..334 | 1..334 | 1710 | 100 | Plus |
| CG12304-PB | 301 | CG12304-PB | 1..301 | 1..334 | 1503 | 90.1 | Plus |
