BO28773.complete Sequence
1600 bp assembled on 2011-09-19
GenBank Submission: KX798849
> BO28773.complete
GAAGTTATCAGTCGACATGGTCAAAACTGCCACCTTTTGGCGTTGCCTTT
TCTTTACATTATGTGGAAGCTTTTTGACGGTTACTCAGGCCAAAGCAGCA
ACTAGCAACGCAAGCAGTTTTTTGGAGGTGTCGCTGCGCTATTTTGATGA
GCAGCTTCTGCTGGACATCCTGCCACGCGCTCAGTGTCCTGGCGAGGATG
AAGGATCTCCGATGGACGAGTTCGCCGACCTGTTTACGGTGGATCAACTT
CGCCAGGGATGGGTGGTGCTGCACGTCTTCGCTGCGGTTTACTTCTTTAT
CCTGCTGGCCATCATTTGCAACGACTACTTCCTGCCGACTGTGGAGTGCA
TCTGCGAGGACTTGCACCTTTCGAAGGACGTGGCAGCGGCCACTTTCATG
GCTACCGCCACCTCCATGCCCGAATTCTTTACGAACACGATCAGCACGTT
GATTCTGGAGTCAGATATGGGCCTGGGCACGATTATCGGCTCGTTAATGT
TCAACACATTGGGAGTGGCCGGCCTAGCTGCGCTCGCCATCGATAAGCCG
GTGCAACTGGACTGGTGGCCCATAGCTCGCGACTGCTTTATTTATGTCTT
CAACACGATTATCCTGCTGGTCTTGGCCTGGAGTGGAAGCATTAGTTTCA
CGGAGTCCTGCATCATGATGGGATTCCTCATCCTTTACTACCTTATCACG
TTTAACAACAACAAGTTTATGCCCGCCATCCGGGTGTTTATCGAGGATCG
TATGAACTGCTGCTTCTCCACGCGATATGATCTAACGGAGCCTCCAGAGA
ACAGTGCCAAGGCGCAGCTTCCACTCAAAAAAGATCCTCTGTCCGGCGAT
GGCCTCTTTGTTCTTAATCTTCCCGAAAACACCTCGTCCATGTCTTCCAC
CGCCAACCTCACACGTAACAAGCATCTTAACGACGAGGACGACGTCGCAG
ACGTAGTGCCCGGGAGCATATACGCTTACCCGCGTGACGCATCCGGTTGG
ATGCAATTCTGGTGGATCTTCGTCTTCCCCATTAAGGTCACGCTATCCCT
ATTGATCCCGCACCCGATGAAGTACCGCCGACTGTACCCATTATCTTTTA
TCATGTGCATCTTGTGCATTGGCGGAAACGCCTACCTTATTGTCTGGATG
CTGACTGCCTTTGGTGTGGCCATTCATGTGCCTACCATTGTGATGGGTCT
GACCTTCTTGGCTGCTGGCTCTACCATGCCGGAAGCCGTCTCCAGTCTTA
TTTCCCTTAGAAATGGGGAAAATGGCATTGGAGTTTCTAATTCGTTGGGC
GCTAACTCCTTGGCCATCTTGCTATCCCTTGGAGTGCCTTGGTTCATCAA
GAATTGTATACACTACGGAACTGGGGAGCCCCAGCAGGTTGGCACCCAGG
GCATCGAGTATAACATCCTGATCTTGATCATATCCACTATGGCGCTGTTC
ATAATCCTCAGCTTCAGTGGATATCGGCTTACGAAGCGAGTGGGCGTAGC
CCTCTTCACGGTGTACGGAGTCTTTATTGTTCTACAGATCCTCATCGAGA
TGAATGTATTCTTTCCCAGAGATTGCAGCAGCGCAAGCTTTCTAGACCAT
BO28773.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17167-RD | 1569 | CG17167-PD | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| CG17167-RC | 1566 | CG17167-PC | 1..1563 | 17..1582 | 7750 | 99.8 | Plus |
| CG17167-RF | 1503 | CG17167-PF | 14..1500 | 96..1582 | 7435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17167-RD | 2506 | CG17167-RD | 294..1863 | 13..1582 | 7835 | 99.9 | Plus |
| CG17167-RC | 2503 | CG17167-RC | 294..1860 | 13..1582 | 7755 | 99.7 | Plus |
| CG17167-RF | 2597 | CG17167-RF | 89..1575 | 96..1582 | 7435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23078770..23079109 | 927..1266 | 1700 | 100 | Plus |
| X | 23542271 | X | 23079805..23080122 | 1265..1582 | 1590 | 100 | Plus |
| X | 23542271 | X | 23074762..23075070 | 239..547 | 1545 | 100 | Plus |
| X | 23542271 | X | 23077856..23078089 | 546..779 | 1170 | 100 | Plus |
| X | 23542271 | X | 23078159..23078310 | 779..930 | 745 | 99.3 | Plus |
| X | 23542271 | X | 23073102..23073247 | 94..239 | 730 | 100 | Plus |
| X | 23542271 | X | 23068594..23068676 | 13..95 | 400 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:48:04 has no hits.
BO28773.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:11 Download gff for
BO28773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RD | 296..1861 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:38 Download gff for
BO28773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RD | 298..1863 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:09 Download gff for
BO28773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RD | 298..1863 | 17..1584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:09 Download gff for
BO28773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23068598..23068676 | 17..95 | 100 | -> | Plus |
| X | 23073104..23073247 | 96..239 | 100 | -> | Plus |
| X | 23074763..23075070 | 240..547 | 100 | -> | Plus |
| X | 23077858..23078089 | 548..779 | 100 | -> | Plus |
| X | 23078160..23078306 | 780..926 | 100 | -> | Plus |
| X | 23078770..23079108 | 927..1265 | 100 | -> | Plus |
| X | 23079806..23080122 | 1266..1584 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:38 Download gff for
BO28773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 56676..56907 | 548..779 | 100 | -> | Plus |
| XHet | 56978..57124 | 780..926 | 100 | -> | Plus |
| XHet | 53581..53888 | 240..547 | 100 | -> | Plus |
| XHet | 51922..52065 | 96..239 | 100 | -> | Plus |
| XHet | 47416..47494 | 17..95 | 100 | -> | Plus |
| XHet | 57588..57926 | 927..1265 | 100 | -> | Plus |
| XHet | 58624..58940 | 1266..1584 | 99 | | Plus |
BO28773.pep Sequence
Translation from 16 to 1600
> BO28773.pep
MVKTATFWRCLFFTLCGSFLTVTQAKAATSNASSFLEVSLRYFDEQLLLD
ILPRAQCPGEDEGSPMDEFADLFTVDQLRQGWVVLHVFAAVYFFILLAII
CNDYFLPTVECICEDLHLSKDVAAATFMATATSMPEFFTNTISTLILESD
MGLGTIIGSLMFNTLGVAGLAALAIDKPVQLDWWPIARDCFIYVFNTIIL
LVLAWSGSISFTESCIMMGFLILYYLITFNNNKFMPAIRVFIEDRMNCCF
STRYDLTEPPENSAKAQLPLKKDPLSGDGLFVLNLPENTSSMSSTANLTR
NKHLNDEDDVADVVPGSIYAYPRDASGWMQFWWIFVFPIKVTLSLLIPHP
MKYRRLYPLSFIMCILCIGGNAYLIVWMLTAFGVAIHVPTIVMGLTFLAA
GSTMPEAVSSLISLRNGENGIGVSNSLGANSLAILLSLGVPWFIKNCIHY
GTGEPQQVGTQGIEYNILILIISTMALFIILSFSGYRLTKRVGVALFTVY
GVFIVLQILIEMNVFFPRDCSSASFLDH
BO28773.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17167-PD | 522 | CG17167-PD | 1..522 | 1..522 | 2718 | 100 | Plus |
| CG17167-PC | 521 | CG17167-PC | 1..521 | 1..522 | 2702 | 99.8 | Plus |
| CG17167-PF | 500 | CG17167-PF | 2..500 | 24..522 | 2577 | 99.4 | Plus |
| CG17167-PE | 409 | CG17167-PE | 1..303 | 1..303 | 1581 | 100 | Plus |
| zyd-PG | 499 | CG2893-PG | 11..489 | 66..516 | 776 | 35.4 | Plus |
| CG17167-PE | 409 | CG17167-PE | 285..409 | 404..522 | 541 | 88.8 | Plus |
