BO28774.complete Sequence
1102 bp assembled on 2011-08-24
> BO28774.complete
GAAGTTATCAGTCGACATGGATTTCAATTTTGATACTGTGACTCCCTGTT
CGACCATGTCGTCCTACTATAACTTTAAGATGGCGAGTGGTGGGCGTGGA
TTTGGGATGTCCCATTCTCTGCCATCCGGAATGGATACTGAATTTTCATT
TCCAAGTTCATCGTCGCGTCGTGGTTACAATGATTTCCCCGGCTGCGGCG
GCAGCGGCGGAAATGGTGGGAGTGCCAACAATTTAGGGGGCGGCAACATG
TGCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAATCTCTGCGG
ATTGTCGCTGGGCAGCGGTGGTAGTGATGATCTCATGAACGATCCTCGGG
CAAGCAACACCAACCTGATTGTCAACTACTTGCCCCAGGACATGACCGAT
CGCGAGCTGTACGCCCTATTCAGAGCCATTGGACCCATCAACACGTGCAG
AATCATGCGAGACTATAAGACTGGCTACAGTTTTGGTTATGCTTTCGTGG
ACTTCACATCGGAAATGGACTCGCAGCGTGCTATTAAAGTGCTGAATGGC
ATCACAGTGCGCAACAAGCGGCTTAAGGTTTCCTATGCACGTCCCGGCGG
AGAATCGATCAAGGACACCAATCTGTATGTGACCAATCTGCCGCGTACCA
TAACCGACGATCAGCTGGACACGATCTTCGGCAAGTACGGTTCCATTGTG
CAGAAGAACATCTTGCGTGACAAGCTCACAGGTCGTCCTCGTGGTGTGGC
CTTTGTTCGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTTCGGCGC
TGAACAACGTAATACCCGAGGGCGGATCACAGCCGCTGTCCGTCCGGTTG
GCTGAGGAGCATGGCAAGGCGAAGGCGGCCCACTTTATGTCGCAGATGGG
CGTGGTTCCAGCAAATGTACCACCGCCGCCACCACAACCGCCAGCACATA
TGGCCGCCGCATTCAACATGATGCACAGAGGTAGATCAATTAAATCACAG
CAACGCTTCCAAAACTCGCATCCCTATTTCGATGCTAAAAAGTTTATCGC
AAGCTTTCTAGACCATTCTGTGTGGGCGCTGCTGAAAGCGGGCGGGAGGG
GT
BO28774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sxl-RC | 1035 | CG43770-PC | 1..1032 | 17..1048 | 5145 | 99.9 | Plus |
Sxl-RN | 1035 | CG43770-PN | 1..1032 | 17..1048 | 5145 | 99.9 | Plus |
Sxl-RR | 1029 | CG43770-PR | 1..965 | 17..981 | 4810 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sxl-RC | 1515 | CG43770-RC | 117..1148 | 17..1048 | 5145 | 99.9 | Plus |
Sxl-RN | 2758 | CG43770-RN | 117..1148 | 17..1048 | 5145 | 99.9 | Plus |
Sxl-RR | 3738 | CG43770-RR | 117..1081 | 17..981 | 4810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7085619..7085955 | 469..133 | 1670 | 99.7 | Minus |
X | 23542271 | X | 7084531..7084820 | 1048..759 | 1450 | 100 | Minus |
X | 23542271 | X | 7085156..7085341 | 761..576 | 930 | 100 | Minus |
X | 23542271 | X | 7085408..7085519 | 579..468 | 560 | 100 | Minus |
X | 23542271 | X | 7092697..7092767 | 87..17 | 355 | 100 | Minus |
X | 23542271 | X | 7087613..7087661 | 134..86 | 245 | 100 | Minus |
X | 23542271 | X | 1371663..1371769 | 358..464 | 205 | 79.4 | Plus |
X | 23542271 | X | 1372462..1372598 | 761..897 | 205 | 76.6 | Plus |
Blast to na_te.dros performed 2014-11-27 07:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 690..729 | 224..185 | 110 | 75 | Minus |
BO28774.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:15 Download gff for
BO28774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sxl-RC | 111..1146 | 17..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:49 Download gff for
BO28774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sxl-RN | 117..1152 | 17..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:18 Download gff for
BO28774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sxl-RN | 117..1152 | 17..1052 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:18 Download gff for
BO28774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7085619..7085954 | 134..469 | 99 | <- | Minus |
X | 7084526..7084819 | 760..1052 | 99 | <- | Minus |
X | 7085158..7085339 | 578..759 | 100 | <- | Minus |
X | 7085410..7085517 | 470..577 | 100 | <- | Minus |
X | 7087614..7087659 | 88..133 | 100 | <- | Minus |
X | 7092697..7092767 | 17..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:49 Download gff for
BO28774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6978559..6978852 | 760..1052 | 99 | <- | Minus |
arm_X | 6979191..6979372 | 578..759 | 100 | <- | Minus |
arm_X | 6979443..6979550 | 470..577 | 100 | <- | Minus |
arm_X | 6979652..6979987 | 134..469 | 99 | <- | Minus |
arm_X | 6981647..6981692 | 88..133 | 100 | <- | Minus |
arm_X | 6986730..6986800 | 17..87 | 100 | | Minus |
BO28774.pep Sequence
Translation from 16 to 1102
> BO28774.pep
MDFNFDTVTPCSTMSSYYNFKMASGGRGFGMSHSLPSGMDTEFSFPSSSS
RRGYNDFPGCGGSGGNGGSANNLGGGNMCHLPPMASNNSLNNLCGLSLGS
GGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY
KTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKD
TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN
KREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVPAN
VPPPPPQPPAHMAAAFNMMHRGRSIKSQQRFQNSHPYFDAKKFIASFLDH
SVWALLKAGGRG
BO28774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sxl-PC | 344 | CG43770-PC | 1..344 | 1..344 | 1823 | 100 | Plus |
Sxl-PN | 344 | CG43770-PN | 1..344 | 1..344 | 1823 | 100 | Plus |
Sxl-PR | 342 | CG43770-PR | 1..324 | 1..324 | 1708 | 99.4 | Plus |
Sxl-PJ | 346 | CG43770-PJ | 21..346 | 18..344 | 1700 | 99.1 | Plus |
Sxl-PG | 346 | CG43770-PG | 21..346 | 18..344 | 1700 | 99.1 | Plus |