BO28775.complete Sequence
2143 bp assembled on 2011-09-19
GenBank Submission: KX796869
> BO28775.complete
GAAGTTATCAGTCGACATGGTGCTCAATCTGCTGTTCATAACCACTGTGA
TCAAGTCCACATTTGGCGTGGTGACCACGGGACTCTGGCTAATTCCACTG
ATGCTGGCCGCCATCACATACTATCGCTATGATGCCGTAGATCCCGAGTC
GAGGCCGCTAGATCAACTGAATTTGTATCCAGAGTACGATTTTATAGTGG
TGGGCAGTGGTTCGGCCGGAGCTGTGGTGGCCAATCGTTTGAGCGAGGTG
AGGAAATGGAAAGTACTGCTGATCGAAGCCGGTCCAGATGAAAACGAGAT
CTCTGATGTACCATCGCTGGCGGCCTATTTGCAATTGAGCAAACTGGATT
GGGCCTACAAGACGGAACCCTCGACGAAGGCGTGTTTGGGAATGCAGAAC
AATCGTTGCAATTGGCCAAGAGGACGAGTCTTGGGCGGCAGTTCGGTGCT
CAACTATATGCTCTATGTGCGTGGCAATCGCCATGATTACGATCACTGGG
CATCGTTGGGCAATCCAGGCTGGGATTACGACAATGTGTTGCGTTATTTT
AAGAAATCGGAGGATAATCGTAATCCCTATTTGGCCAACAACAAGTATCA
TGGTCGCGGAGGACTGCTAACGGTTCAGGAATCACCGTGGCATTCACCTT
TGGTTGCCGCCTTTGTGGAAGCCGGTACTCAGTTGGGCTATGATAATCGT
GACATTAATGGCGCCAAACAGGCGGGCTTTATGATTGCCCAAGGAACGAT
ACGTCGTGGTTCGAGATGTTCCACCGCCAAGGCATTTCTGCGACCCATAC
GCATGCGAAAGAATTTCCATCTGTCGATGAACTCACATGTGACCAGGGTC
ATCATTGAACCGGGAACGATGAGGGCACAGGCCGTGGAATTTGTGAAACA
TGGCAAAGTGTATAGGATAGCGGCCAGGAGGGAGGTTATCATCTCAGCTG
GTGCCATCAATACCCCGCAGCTAATGATGCTCTCTGGTTTGGGACCACGA
AAACATCTGGAAAAGCATGGCATTCGAGTGTTGCAAGATCTGCCCGTTGG
CGAGAATATGCAGGATCATGTGGGAATGGGTGGACTCACTTTTCTGGTCG
ATAAGCCCGTGGCCATTGTCCAGGATCGTTTCAATCCCACAGCCGTCACC
TTTCAGTATGTGTTGCGTGAACGAGGACCGATGACCACATTGGGTGGAGT
CGAGGGTCTGGCCTTTGTGCACACACCCTACTCAAATCGCAGTCTCGATT
GGCCGGATATTCAATTTCATATGGCACCGGCTTCCATTAACTCAGATAAT
GGAGCCAGAGTAAAGAAGGTGTTGGGCCTGAAGGAATCGGTGTACCAAGA
GGTCTATCATCCCATAGCCAACAAGGATAGTTGGACGATAATGCCGCTGC
TATTGAGGCCAAGATCGCGGGGATCTGTTAAATTACGATCGGCGAATCCC
TTTCACTATCCCCTAATCAATGCCAACTACTTTGACGATCCCTTGGATGC
CAAAACTTTGGTGGAAGGAGCCAAGATAGCTCTTCGCGTAGCTGAAGCCC
AGGTTTTCAAGCAATTCGGATCGAGACTGTGGCGTAAACCGCTGCCCAAT
TGCAAACAGCATAAATTCCTATCCGATGCCTATTTGGAGTGCCATGTGCG
CACCATTTCGATGACCATCTACCATCCATGTGGCACTGCGAAGATGGGAC
CCGCCTGGGATCCCGAGGCTGTGGTGGATCCACGCTTGAGGGTCTATGGA
GTTCGCGGTCTCAGGGTGATTGATGCCAGCATTATGCCAACGATTAGTAG
TGGGAATACCAATGCACCGGTTATAATGATAGCTGAAAAGGGCGCAGATC
TCATCAAGGAAGATTGGCTAACAAATCCCGAGTACAAAGTAAAGCGGCAG
GCAAATAGACTTAGAGATCCAGATCCTGCTAGTAGTAACATTCAGGGCAT
CATCACATTGCCCAACAATATCACTCAAGGCGACAGCAGCAACATCAGTG
ACAGGAGCAACATGGAGAGCAACTTCAGCAACAGCAGTCACATAAACAAC
ATCAATTTTAACAGCAACAGCAACAGCAGCAACATTGAAAGCAGCAGCAA
CTTCACACTCAACTATGCGAATAGTGCAAGCTTTCTAGACCAT
BO28775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9518-RC | 2112 | CG9518-PC | 1..2109 | 17..2125 | 10545 | 100 | Plus |
| CG9518-RB | 2112 | CG9518-PB | 1..2109 | 17..2125 | 10545 | 100 | Plus |
| CG9518-RA | 2112 | CG9518-PA | 1..2109 | 17..2125 | 10545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9518-RC | 3952 | CG9518-RC | 944..3054 | 15..2125 | 10555 | 100 | Plus |
| CG9518-RB | 3897 | CG9518-RB | 889..2999 | 15..2125 | 10555 | 100 | Plus |
| CG9518-RA | 3679 | CG9518-RA | 671..2781 | 15..2125 | 10555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14863887..14865997 | 2125..15 | 10555 | 100 | Minus |
| X | 23542271 | X | 14876699..14877080 | 783..402 | 245 | 70.9 | Minus |
| X | 23542271 | X | 14855774..14855907 | 531..398 | 235 | 78.4 | Minus |
| X | 23542271 | X | 14875621..14875794 | 1867..1694 | 195 | 74.1 | Minus |
Blast to na_te.dros performed 2014-11-27 10:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6921 | 1963..2105 | 266 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6862 | 1984..2106 | 263 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6882 | 1963..2105 | 256 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2473 | 1963..2105 | 255 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2436 | 1980..2104 | 247 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6979 | 1931..2132 | 247 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6840 | 1984..2105 | 243 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2526 | 1947..2113 | 242 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6891 | 1917..2105 | 226 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2716..2926 | 1885..2105 | 208 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6949 | 1931..2085 | 176 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1618 | 1915..2059 | 166 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2424..2530 | 1948..2054 | 148 | 59.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1023..1183 | 1886..2059 | 137 | 58.9 | Plus |
BO28775.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:11 Download gff for
BO28775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9518-RA | 666..2774 | 17..2127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:42 Download gff for
BO28775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9518-RA | 673..2781 | 17..2127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:16 Download gff for
BO28775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9518-RA | 673..2781 | 17..2127 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:16 Download gff for
BO28775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14863885..14865995 | 17..2127 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:42 Download gff for
BO28775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14757918..14760028 | 17..2127 | 99 | | Minus |
BO28775.pep Sequence
Translation from 16 to 2143
> BO28775.pep
MVLNLLFITTVIKSTFGVVTTGLWLIPLMLAAITYYRYDAVDPESRPLDQ
LNLYPEYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPS
LAAYLQLSKLDWAYKTEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLY
VRGNRHDYDHWASLGNPGWDYDNVLRYFKKSEDNRNPYLANNKYHGRGGL
LTVQESPWHSPLVAAFVEAGTQLGYDNRDINGAKQAGFMIAQGTIRRGSR
CSTAKAFLRPIRMRKNFHLSMNSHVTRVIIEPGTMRAQAVEFVKHGKVYR
IAARREVIISAGAINTPQLMMLSGLGPRKHLEKHGIRVLQDLPVGENMQD
HVGMGGLTFLVDKPVAIVQDRFNPTAVTFQYVLRERGPMTTLGGVEGLAF
VHTPYSNRSLDWPDIQFHMAPASINSDNGARVKKVLGLKESVYQEVYHPI
ANKDSWTIMPLLLRPRSRGSVKLRSANPFHYPLINANYFDDPLDAKTLVE
GAKIALRVAEAQVFKQFGSRLWRKPLPNCKQHKFLSDAYLECHVRTISMT
IYHPCGTAKMGPAWDPEAVVDPRLRVYGVRGLRVIDASIMPTISSGNTNA
PVIMIAEKGADLIKEDWLTNPEYKVKRQANRLRDPDPASSNIQGIITLPN
NITQGDSSNISDRSNMESNFSNSSHINNINFNSNSNSSNIESSSNFTLNY
ANSASFLDH
BO28775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9518-PC | 703 | CG9518-PC | 1..703 | 1..703 | 3697 | 100 | Plus |
| CG9518-PB | 703 | CG9518-PB | 1..703 | 1..703 | 3697 | 100 | Plus |
| CG9518-PA | 703 | CG9518-PA | 1..703 | 1..703 | 3697 | 100 | Plus |
| CG9503-PA | 626 | CG9503-PA | 20..623 | 20..620 | 2024 | 60.1 | Plus |
| CG45065-PA | 613 | CG45065-PA | 3..604 | 16..617 | 1935 | 58.1 | Plus |
