BO28777.complete Sequence
4135 bp assembled on 2011-09-19
GenBank Submission: KX795511
> BO28777.complete
GAAGTTATCAGTCGACATGGAAACAGCGATGGATGTGGTGTGTGTAATGG
ATACGGCGGTGGGCGACCATCTGGAGGACCGCCAGTGTGCGCTGGAGGAG
ATCAAGCAGGCAGTGCAGTCGGCGGGCGCCAACTTTCAGCGGGTTCAGTT
CGAGCGCCTGGACTTCGGCGAGACGAATGTGCTGGAGACGTTTTACAACG
CCGATGTGGCCATTATCGACCTGAGCATTCTCACCCAGCAGCGGCCGCTT
TCCTATCACTACGGCGTTAGGGAGAGCTTCGGGATGAAGGAGAACATCCT
CACCTACAACGACATCGATTCCAAGCAGACGCTCAGTCTCAAGCTCTCGT
GTGCCAACTACCTGTTTCTCAGCTACAAGCGGAATGCGGAGACCAATTCC
TGCCACCTGACCAGCCAGCCCAACAGCGGCAACAACAGCAAGGAACCCAA
TGCCGAAGGACGAGTGCCCACTTTGCAGTGGCGCCTCAAGCGAAAGCTGC
AAGATGTTGAGATCCAGTCGAAAGCCCACATGCGTGAGAAATTTCTGAGT
GACATGCGAACGGCGCGGGACACGTACGCCACCAACGGCGCCAAGCTGCA
GAGTATATTGCACGAGATGCGAAAGCGGCTGGACGATCCGCATGTCCTGT
CTGGCGAAGTGGTACACAGTTTCATGTGCTCGCTGAGGGATGTGCAGGAC
TACGATGCCATGGTGCGACTGGTCAATGACCTGAAGAACATACCCAACAC
CCGGAAGTACGTGGAGACGGGCAACATGAGTTTCCTGTACGCCTTCGCCC
TGAACCGAAGAAATCGAAAGGGAGACCGTGAAAAGGCTCTGGAATCTTCG
CTGAAGGCGCTGGAAAAGAAGGAGAACCACTTTCCGGACATGCTCTGCCT
GTGCGGCCGCATCTACAAGGACATCTTTGTGGAATCCGACTACACGGACG
CCACCAGTTTGGCGCACGCCATCAAGTGGTACCGCCAAAGCTTTGAGGTG
CAGCCGAATGAGTATGCAGGCATCAATCTGGCTACTCTGCTGGTTATCGA
GGGCAAGGAGTTTACCAATACGGAGGAGTTGCAGCACATCGGCATGACCT
TAAACAATTTAATCGGTAAAAAGGGCAGCCTATCCTCGCTGAGTGAGTAT
TGGGATGTGGCCACCTTCTTTGAGATCTCCGTTTTGGCCAACGACTACGC
CAAGGCGATTCAAGCTGCCGAGTGCATGTTCAAGCTAAAGCCACCCAACT
GGTATCTGAAGTCGACCATCGGAAATATCTCTCTTATACATCGATTTCGA
AAGAAGCCCGAGGAACGCCAGCCGCCCATCGAGGAGCAGGTGTTCCAGTT
CTGGATGGACTTCTTTCTGGAGGCCACCAACACCGAGGAGGTTAAGAACA
GCATTCGCTTTCCGATTCTGATCCTCGAGCCTCAGAAGATTTATATGCCC
AGTTATGTGACTATAAACATGGATGCGGATGAGAAGTCCATTCAGATTGT
GAACATCTGTTTGGCTCACGCAAAGAATGCGTGTAAGAAAATCCACGACT
TCCTTTTCGTGGCATCGAAGATCAAGTCCGTCAGCCTTTACAAGAGGGAT
GATCGTTGTGCCTACTTGTACGTCCATCACAACTCAGATGATTTTCAAAT
ATATTTTCCCTCCACTGAACGACGACAAAAGTTCTACGATATGATCCTGG
AGATGACTGCAGATCAGGTGGTGTTTGTCAATCTCAGCAATGATGACGCT
AATATCGAGTACGAGTACGACTACGATGAGCAGAATCGCAAAATGGTGCT
GGGCAAAGGTACTTATGGCACCGTGTACGCCGCCAGGGACAAGCAGACGC
AGGTGCGAATCGCCATTAAGGAGGTGCCGGAAAAGAACTCGCAGGATGTG
CAGCCACTGCACGAGGAGATTAAGTTACACTCTCAGCTGCGACATCGCAA
CATAGTTCGCTATTTGGGATCGTGTTCGGAGAACGGCTTCTTCAAGATCT
TCATGGAGCAGGTGCCGGGAGGATCGCTTTCCGACCTCTTAGAGACCAAA
TGGGGTCCGCTCAAGGACAACGAGTCCACCATGGCCTTCTACTCCAAGCA
GATCCTCGAGGGGCTGAAGTACCTTCACGAGCAGGACATTGTTCATCGCG
ATATAAAGGGTGACAACGTGCTGGTTAACACGTATAGCGGCGTGGTTAAG
ATCTCCGATTTCGGCACCTCCAAGCGGCTGGCCCGCATCAACCCGATGAC
GGAGACCTTTACGGGCACCTTGCAGTACATGGCGCCGGAGGTGATTGACC
AGGGAGTACGCGGCTATGGCCCGGCGGCTGACATCTGGTCCTTTGGATGC
ACAAACGTTGAGATGGCTACGGGCAAACCACCGTTTATCGAGCTGGGTAG
CGCCCATGCGGCCATGTTCAAGGTGGGCTTTTACAAGAAGCATCCGAACA
TACCCGAGGAGCTGTCCGCCAACGCAAAGAACTTTATTTTGCGTTGCTTT
GCCATCAGCGTGATGGACCGACCCTCCGCCTCGCAACTTCTGGAAGATCC
CTTCCTACAAGATAAACCCCGCAAGGTGCGCCCAGCCCTGCCCATCAATA
CTGAGTTCGGACGCAGCATTTCGGTGCCGGCTGATCGGTTTGTGCACAAA
ACCACACCGCCGCTGAGCTACAACACAACCTGCAATACGCCCACAACGCC
GGAATTGGACATAACGCATTCATCCTCGGTGGACATTGACGAGCTGCCCA
GCAACCAGTTTATGCTTGAACGGCGAAATTCCCATGGATTTTTGCTCTCG
CCAGAGATTGAACCTTCCACGCCGTCCTTGCGTACGAGCATTAGTGAGAC
GAGCGAGACTGACGGTTTTTACAGGCTTAAAAAGGATTCGCAGAGGCGGA
CAACGCTTTCCAAGGTGCTGGCACTAGACGAATCCAAGATCTGCGATATT
TGGCTGAAGAAGGTCGACGCTGATCAGAACTCGATTGCGATTAGGAAAAG
CGATTTGGAGGTTCTAATCCGAGGACTGCGGGACTACATTATGAACGAAA
ACGAAAAGCATTTGGAAGCGACTATCAACGAACTGAAACAAAAGCTGAAC
AACGACGCAGTTGCTCTGGACCATCTTCATTTGGCGCTGTACTCCTTTCA
GGACGCCGTGGTCTGCGTACTGCGGTACCATTGCATCAAACCCCATTGGA
TGTTCGCATTGGATAATCTGGTTAAGCGGGCCGTCCAGGCGGCGGTCACT
ATTTTCTCTCCTGAACTGGGCGCCAATCTGGCGGACAAAGACCTGTCTGG
AAATGATGATGAGAGCTTGCGTACAAGTCTAATGCAGAAGGGTTCCACCG
AGAGCCAGGAAAAGCAGAGCCTGGAAAAAGTTCTTCCCACGAGCAACACT
CGCGAAGGTGTGGGATTAACGCCTGCGGAATCGGGCGGGGATGCTCTGTC
CAGTTCGATGGAGTGCGCGCGCATCCTGAGAGACATCCGTGACAATCAGC
AGAAGCTGCAACGCCAGCTCCTTGAGCAGCAGCGGCAGAGCATGAGGGCC
CTGCATAATATCAGTCAGGAGCTGGCTCACATTTACATGGGCGGCAGAAA
GAGATTAAGACGCACAATAAACGGCTTTAACAAAAAGTGCCATAGAATGA
GTACCAGTGTGGGCGGAACGTCCGGAGTCCGTCCGAATATAGCGGGCAAT
CCCCGGAGGCAGCTAAACAAGCATCACTTTGGTCTTCACGAAGTAGACGA
GCAGTTGGAGCAGTGGTTGACCCAGCAGGAAATAGACGAGTTCTCAAAGA
CGCTCATCCTGAATGAAGGTTTTACATTTGACGACTTTATCTATAACATG
GAAAAGCTGGACCTCATGAGGCTGGGTCTGCGCGTTGGCATCGAAGTGCG
TTTGTGGAAACTCATTATACAAGAACGTGTGTGCACCTCGTCCGATTGTG
TGGACAGTCCACCAAGCACTTACCACAAACCCATTGGAGGCAATAGCTCT
TTTGCGCTTATTGACAACAACAATACGCTACCATCACCCACAACCACAAC
TCCCGGAACGCCGGGCATCAAAACGAAAATCAAGAAAAGCGAAAGCGAGT
ACGATTCGTGCAGCGAGGCAAGCTTTCTAGACCAT
BO28777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk92B-RC | 4092 | CG4720-PC | 1..4089 | 29..4117 | 20430 | 100 | Plus |
| Pk92B-RB | 3591 | CG4720-PB | 1..3588 | 530..4117 | 17925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk92B-RC | 4596 | CG4720-RC | 194..4294 | 17..4117 | 20490 | 100 | Plus |
| Pk92B-RB | 5168 | CG4720-RB | 1091..4866 | 342..4117 | 18865 | 100 | Plus |
| Pk92B-RB | 5168 | CG4720-RB | 194..520 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19884196..19885095 | 2710..3609 | 4500 | 100 | Plus |
| 3R | 32079331 | 3R | 19881484..19882381 | 523..1420 | 4490 | 100 | Plus |
| 3R | 32079331 | 3R | 19882841..19883645 | 1758..2562 | 4010 | 99.9 | Plus |
| 3R | 32079331 | 3R | 19882437..19882776 | 1420..1759 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 19885154..19885428 | 3608..3882 | 1375 | 100 | Plus |
| 3R | 32079331 | 3R | 19885493..19885728 | 3882..4117 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 19880113..19880310 | 146..343 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 19880881..19881061 | 342..522 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 19883709..19883855 | 2563..2709 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 19879912..19880043 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:49:21 has no hits.
BO28777.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:12 Download gff for
BO28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk92B-RC | 194..4294 | 17..4119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:00 Download gff for
BO28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk92B-RC | 194..4294 | 17..4119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:44 Download gff for
BO28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk92B-RC | 194..4294 | 17..4119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:44 Download gff for
BO28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19880883..19881061 | 344..522 | 100 | -> | Plus |
| 3R | 19879912..19880043 | 17..148 | 100 | -> | Plus |
| 3R | 19880116..19880310 | 149..343 | 100 | -> | Plus |
| 3R | 19881484..19882381 | 523..1420 | 100 | -> | Plus |
| 3R | 19882438..19882776 | 1421..1759 | 100 | -> | Plus |
| 3R | 19882843..19883645 | 1760..2562 | 99 | -> | Plus |
| 3R | 19883709..19883855 | 2563..2709 | 100 | -> | Plus |
| 3R | 19884196..19885095 | 2710..3609 | 100 | -> | Plus |
| 3R | 19885156..19885428 | 3610..3882 | 100 | -> | Plus |
| 3R | 19885494..19885728 | 3883..4119 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:00 Download gff for
BO28777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15705634..15705765 | 17..148 | 100 | -> | Plus |
| arm_3R | 15705838..15706032 | 149..343 | 100 | -> | Plus |
| arm_3R | 15706605..15706783 | 344..522 | 100 | -> | Plus |
| arm_3R | 15707206..15708103 | 523..1420 | 100 | -> | Plus |
| arm_3R | 15708160..15708498 | 1421..1759 | 100 | -> | Plus |
| arm_3R | 15708565..15709367 | 1760..2562 | 99 | -> | Plus |
| arm_3R | 15709431..15709577 | 2563..2709 | 100 | -> | Plus |
| arm_3R | 15709918..15710817 | 2710..3609 | 100 | -> | Plus |
| arm_3R | 15710878..15711150 | 3610..3882 | 100 | -> | Plus |
| arm_3R | 15711216..15711450 | 3883..4119 | 99 | | Plus |
BO28777.pep Sequence
Translation from 16 to 4135
> BO28777.pep
METAMDVVCVMDTAVGDHLEDRQCALEEIKQAVQSAGANFQRVQFERLDF
GETNVLETFYNADVAIIDLSILTQQRPLSYHYGVRESFGMKENILTYNDI
DSKQTLSLKLSCANYLFLSYKRNAETNSCHLTSQPNSGNNSKEPNAEGRV
PTLQWRLKRKLQDVEIQSKAHMREKFLSDMRTARDTYATNGAKLQSILHE
MRKRLDDPHVLSGEVVHSFMCSLRDVQDYDAMVRLVNDLKNIPNTRKYVE
TGNMSFLYAFALNRRNRKGDREKALESSLKALEKKENHFPDMLCLCGRIY
KDIFVESDYTDATSLAHAIKWYRQSFEVQPNEYAGINLATLLVIEGKEFT
NTEELQHIGMTLNNLIGKKGSLSSLSEYWDVATFFEISVLANDYAKAIQA
AECMFKLKPPNWYLKSTIGNISLIHRFRKKPEERQPPIEEQVFQFWMDFF
LEATNTEEVKNSIRFPILILEPQKIYMPSYVTINMDADEKSIQIVNICLA
HAKNACKKIHDFLFVASKIKSVSLYKRDDRCAYLYVHHNSDDFQIYFPST
ERRQKFYDMILEMTADQVVFVNLSNDDANIEYEYDYDEQNRKMVLGKGTY
GTVYAARDKQTQVRIAIKEVPEKNSQDVQPLHEEIKLHSQLRHRNIVRYL
GSCSENGFFKIFMEQVPGGSLSDLLETKWGPLKDNESTMAFYSKQILEGL
KYLHEQDIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLARINPMTETFTG
TLQYMAPEVIDQGVRGYGPAADIWSFGCTNVEMATGKPPFIELGSAHAAM
FKVGFYKKHPNIPEELSANAKNFILRCFAISVMDRPSASQLLEDPFLQDK
PRKVRPALPINTEFGRSISVPADRFVHKTTPPLSYNTTCNTPTTPELDIT
HSSSVDIDELPSNQFMLERRNSHGFLLSPEIEPSTPSLRTSISETSETDG
FYRLKKDSQRRTTLSKVLALDESKICDIWLKKVDADQNSIAIRKSDLEVL
IRGLRDYIMNENEKHLEATINELKQKLNNDAVALDHLHLALYSFQDAVVC
VLRYHCIKPHWMFALDNLVKRAVQAAVTIFSPELGANLADKDLSGNDDES
LRTSLMQKGSTESQEKQSLEKVLPTSNTREGVGLTPAESGGDALSSSMEC
ARILRDIRDNQQKLQRQLLEQQRQSMRALHNISQELAHIYMGGRKRLRRT
INGFNKKCHRMSTSVGGTSGVRPNIAGNPRRQLNKHHFGLHEVDEQLEQW
LTQQEIDEFSKTLILNEGFTFDDFIYNMEKLDLMRLGLRVGIEVRLWKLI
IQERVCTSSDCVDSPPSTYHKPIGGNSSFALIDNNNTLPSPTTTTPGTPG
IKTKIKKSESEYDSCSEASFLDH
BO28777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk92B-PC | 1363 | CG4720-PC | 1..1363 | 5..1367 | 7096 | 100 | Plus |
| Pk92B-PB | 1196 | CG4720-PB | 1..1196 | 172..1367 | 6231 | 100 | Plus |
| hppy-PE | 934 | CG7097-PE | 24..284 | 587..848 | 387 | 37.4 | Plus |
| hppy-PB | 947 | CG7097-PB | 24..284 | 587..848 | 387 | 37.4 | Plus |
| hppy-PC | 968 | CG7097-PC | 24..284 | 587..848 | 387 | 37.4 | Plus |
