BO28781.complete Sequence
1597 bp assembled on 2011-09-19
GenBank Submission: KX794617
> BO28781.complete
GAAGTTATCAGTCGACATGAACAACCTGGCAGACACTGTGGTAGTTGATC
CTGGATTCGGAGGCGGCGACAAGCAGCAGCAGGCTGGACCGGCGCCGCAG
GATGCCAGCGTGGTGGTTCCTCCGCCGGCCACCAAGCAGTCCTCGGCTCT
GAAGAAGACAAGTCGGTACAGGAGCCGCTCGCTTAGTGCCTCCTCAACGG
ATTCCTTCAGCTCCGCCAGCTACACGGGCAGCAGCGAGGATGGCGACGAC
GTGCCGCCCAGGGAGAAGGTCCAAAAGAACTCCAAAGGCAGCTCCGATTT
CTGTGTAAGGAACATAGGCGCCCAGCATGCATTTGGGCGCAGGGAGATCG
AGATTGCGGAGCAGGAGATGCCGGGCATCATAGCGCTGAAGAAGCGGGCG
GCCGAGGACAAGCCTCTGAAGGATGCCAAGATCGTGGGTTGCACACACAT
CAACGCCCAGACTGCCGTGCTCATCGAGACGCTGGTGGAACTGGGCGCCA
GCGTGCGCTGGGCCGCCTGCAACATCTACTCCACGCAGAACGAAGTGGCT
GCTGCTTTGGCCGAATCCGGAATCCCGATCTTTGCCTGGCGCGGCGAGAC
GGAAGAGGACTTCTGGTGGTGCATAGATCGCTGCGTTAACGCCGAGAACT
GGCAGCCAAACATGATCCTGGACGATGGCGGCGATGCCACGCACTTGATG
CTAAAAAAGTACCCGACCATGTTCAAGTTGGTCAAGGGAATCGTCGAGGA
GAGCGTCACCGGAGTGCACCGTCTCTATCAGCTCTCTAAGGCCGGCAAGC
TGACAGTGCCGGCGATGAATGTCAACGATTCGGTGACAAAGACCAAATTT
GACAACCTCTACAGCTGCAAGGAATCCATCCTGGACAGCCTCAAGCGCTC
CACGGACGTGATGTTCGGTGGCAAGCAGGTCGTGGTCTGTGGCTACGGCG
ATGTGGGCAAGGGATGTGCCCAGGCTCTAAAGGGGCAGGGCTGCATTGTG
TACATCACAGAGATCGATCCCATTTGCGCCCTGCAGGCCAGTATGGATGG
CTTCCGTGTGGTCAAGCTGAACGAGGTGATCCGCAACGTAGACATTGTGG
TGACGGCGACCGGCAACAAGAACGTGGTGGTGCGCGAGCACATGGACAAG
ATGAAGAGTGGCTGCATCGTATGCAACATGGGCCACTCGAACACGGAAAT
CGATGTGAATGGCCTGCGCACACCGGACTTGACCTGGGAGAAGGTGCGCT
CCCAGGTGGATCACATTATCTGGCCGGAGGGCAAGTACATCATTCTTCTG
GCCGAGGGCAGGCTGGTCAATCTGAGCTGCTCCAGCATCCCCTCGTTCGC
CGTGTCTATCACCTCGGCCACCCAGGCCCTGGCCCTGATCGAGCTTTTCA
ATGCCCCGCCCGGACGCTACAAGTCGGATGTCTACTTGCTGCCCAAGAAG
ATGGACGAGTATGTTGCCAGCCTGCACCTGCCCACCTTCGATGCCCATTT
GACGGAGCTGAGCGACGAGCAGGCCAAGTACATGGGACTGAACAAGGCCG
GTCCTTTCAAGCCCAACTACTACCGCTACGCAAGCTTTCTAGACCAT
BO28781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9977-RA | 1566 | CG9977-PA | 1..1563 | 17..1579 | 7800 | 99.9 | Plus |
| Ahcy89E-RD | 1515 | CG8956-PD | 228..1470 | 328..1573 | 1485 | 74.8 | Plus |
| Ahcy89E-RC | 1479 | CG8956-PC | 228..1470 | 328..1573 | 1485 | 74.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9977-RA | 3020 | CG9977-RA | 536..2099 | 16..1579 | 7805 | 99.9 | Plus |
| Ahcy89E-RD | 1969 | CG8956-RD | 574..1816 | 328..1573 | 1485 | 74.8 | Plus |
| Ahcy89E-RC | 1780 | CG8956-RC | 451..1693 | 328..1573 | 1485 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2769387..2769979 | 1579..987 | 2965 | 100 | Minus |
| 3L | 28110227 | 3L | 2771268..2771790 | 538..16 | 2615 | 100 | Minus |
| 3L | 28110227 | 3L | 2770041..2770493 | 989..537 | 2250 | 99.8 | Minus |
| 3R | 32079331 | 3R | 16979477..16980037 | 888..328 | 795 | 76.1 | Minus |
| 3R | 32079331 | 3R | 16978780..16979024 | 1454..1207 | 230 | 73.8 | Minus |
| 3R | 32079331 | 3R | 16978592..16978699 | 1573..1466 | 195 | 78.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:51:29 has no hits.
BO28781.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:14 Download gff for
BO28781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9977-RA | 535..2097 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:21 Download gff for
BO28781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9977-RA | 537..2099 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:36 Download gff for
BO28781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9977-RA | 537..2099 | 17..1581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:36 Download gff for
BO28781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2769385..2769977 | 989..1581 | 99 | <- | Minus |
| 3L | 2770042..2770491 | 539..988 | 99 | <- | Minus |
| 3L | 2771268..2771789 | 17..538 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:21 Download gff for
BO28781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2769385..2769977 | 989..1581 | 99 | <- | Minus |
| arm_3L | 2770042..2770491 | 539..988 | 99 | <- | Minus |
| arm_3L | 2771268..2771789 | 17..538 | 100 | | Minus |
BO28781.pep Sequence
Translation from 16 to 1597
> BO28781.pep
MNNLADTVVVDPGFGGGDKQQQAGPAPQDASVVVPPPATKQSSALKKTSR
YRSRSLSASSTDSFSSASYTGSSEDGDDVPPREKVQKNSKGSSDFCVRNI
GAQHAFGRREIEIAEQEMPGIIALKKRAAEDKPLKDAKIVGCTHINAQTA
VLIETLVELGASVRWAACNIYSTQNEVAAALAESGIPIFAWRGETEEDFW
WCIDRCVNAENWQPNMILDDGGDATHLMLKKYPTMFKLVKGIVEESVTGV
HRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYSCKESILDSLKRSTDVMF
GGKQVVVCGYGDVGKGCAQALKGQGCIVYITEIDPICALQASMDGFRVVK
LNEVIRNVDIVVTATGNKNVVVREHMDKMKSGCIVCNMGHSNTEIDVNGL
RTPDLTWEKVRSQVDHIIWPEGKYIILLAEGRLVNLSCSSIPSFAVSITS
ATQALALIELFNAPPGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD
EQAKYMGLNKAGPFKPNYYRYASFLDH
BO28781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9977-PA | 521 | CG9977-PA | 1..521 | 1..521 | 2716 | 100 | Plus |
| Ahcy89E-PC | 492 | CG8956-PC | 18..492 | 43..521 | 1976 | 76.8 | Plus |
| Ahcy89E-PD | 504 | CG8956-PD | 18..496 | 43..525 | 1973 | 76.2 | Plus |
| Ahcy13-PC | 432 | CG11654-PC | 16..432 | 106..521 | 1154 | 53.1 | Plus |
| Ahcy13-PA | 432 | CG11654-PA | 16..432 | 106..521 | 1154 | 53.1 | Plus |
