Clone BO28782 Report

Search the DGRC for BO28782

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:287
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG14681-RB
Protein status:BO28782.pep: Imported from assembly
Sequenced Size:2386

Clone Sequence Records

BO28782.complete Sequence

2386 bp assembled on 2011-09-19

GenBank Submission: KX797731

> BO28782.complete
GAAGTTATCAGTCGACATGTTGGCAATGAAGGATAAGCCTTGGCTGCTGC
TATTTGGCCTATTGGCCGCATTAAGCTGCCTAGCCAGCTTTGGAGATGCC
GCCTACCCCTATTATGGCACCAAGATCGGAGCCCTGACCCGCCTGCACCA
CGGTGTCTCCGGCGATGTGTACGCCGTCGATTCCCGCACCATCTTCATCA
AGAAGTTCAATTACGACGGCGAGGCGCCAGCTGCCTACTTCTATGTGGGG
AATACTGCACGGCCAAGTAATGAAGGTGCCGCCCGGCTGAGGGACGAAAG
GGGCGGGACCGCCTCCCTGACCCGCCGTTACAGGAACAAGGACGTCACAC
TGTCGCTGCCCGAGGGCAAAACACTGCGCGACATCAAATGGTTCTCGGTG
TGGTGCGATGAGTTCGCGGTGAATTTCGGTGACGTTTCCATTCCGCCCAA
CTTGGACTTCCCGCGGCCACAGAAGATCAGCGCTCTGAGGGGCGTCCATG
GTGTCTCCTCCGACAACATTGTCATCGTGGACGCCCAAACGCTGCTGGTG
CCCAACTTTAGCTACGACGGAGAGGCGCCAGATGCCAAATTCTGGGTGGG
TCGTGGCCAGCGGCCCACTTCCGACGGCCTGAGGATTCCGGACGAGAATG
GCAAGGAGAACCCGCTGCGTCGCTACGAGCGCAAGACAATCGTGCTGACC
CTGCCCGAGGACCTGACCATCTTCGACATTGGTCACTTTGGCGTTTGGTG
CGAGGCCTTCACCGTGGATTTTGGCCACGTTCGCCTGCCGGAGGGCCTGA
ATGTGCCGCCCTCCCTGAAGATGCTCGGAATCAGTCCTCAGTCGAAGCTC
AACTGCGAGGTGCTCTACGACGATCTGGCATTCGAGGTTCGCTGGGCGGT
GGCCGGCGAGAGCATCGTGGTCCAATTGGTGGCCAAATTGGAACCGAACC
ACTACATGTCCTTCGGAATTTCGCCAAATAAGAACATTAGCCAGATGATT
GGTGCGGATGCAGTGGTGGCCTGGGTGGATCCCCAGACCGGAAACGGATT
TGCAACGGACTACTTCCTGGAGGGGAAGGCTCAGTGCTCTGGTGGGCGTG
GCGCTTGTCCGGACACCAAGATCTCTGAGAAGACCAACTCCATAAGGCTA
CTTAACGCTGCCATGGTAAATGGCTATTCAATTGTGACCTACCAAAGATC
CCTAGCTGCCACGGATCGCCTGGATCTGCCAATCTCGATTACGGGAGCGG
AATCAGTGGTGTGGGCAATTGGACCACTTAACGATTACCAGGAGGTCTCC
TTCCATACATTCTACAACAAGCATCTGCACCAGATTGAGTTCGGTCGCCA
GCCCAAGTGGAATTGTCCCTTGCCAGAGGGTGCTCGTGGCAATAGCAACT
CATCGGAACAGGAGGACTCTGCTCCCGCGGCCCAGAGCTCTACTGGCGGA
GCTGGTTATCCGCCAGCAGGCCGACCCAACGTGGAACCCGATGAGGAGTT
CTACGAGAATCGTGCGGAGGCTCTGCATCGTCAGCCACCGCAGAGGCGCC
AGGAAACAGCGATCATCACCCAAAGGCGTCCAGTGCCCACTCCAAAGCCA
GTGAACAGCAATGGCGCCTGGGACATCCCTGCCATTCAGTGTCACGAACC
AGAGGACGGAGTGTTCTATGCCCAGATGGGTCCCACGGGAGGAAAACACG
GCTATCCAGCAATCACAGGACACGTCGGATGGGGAATTTCCTGGTACATC
AACGGACTTCTGATCCCCGAGATTCATGTAGTGCGAGGCAAGACCTATAC
ATTTGTAGTGGAGGGTGGAAACAATCCGGATATTCCGGCCAAGTACCATC
CGTTCTACATCAGTGACGATCCTGTGGGAGGATACGAGCACAAACGCGAG
GAAGAGAAAAAGGCCGTGCGCATCTACGCCGGAGTACATCGCTCCCGGTC
CGGCCAAGTCACGCCCACCGGCGTTGGCCGTCTCTGCAACTGGACACCAG
ATGTGGAAGGTCCACCGGCGGACGACTACCAGTCCTTCGGCGCCTACCAG
CGCACCCTGACCCTCAAGTGCGACGCCGGCGAGCCGGGAGTGATTACCTG
GAAGCCGGACCGGAATACGCCGGACACGGTGTACTACCATTGCTTCACAC
ACCGCTATCTGGGATGGAAGATCCACGTGCACGACTCATGTGACTCGGAA
GCGGGTGGACTCAAAGGAGCCGCCTCCGAACGCCACGAAATCCGGCTGCC
GGCGAAAGCCACCGTCGCGGAACCGGCGCCAGTGCACGAGGACTACGCCG
GAGAGGCGTCCGTACGGCACGAAACCAAGATGGCATCCGCGCTGCTGAGG
CTCTCGAGGAGAGCCTACGCAAGCTTTCTAGACCAT

BO28782.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Skeletor-RC 2355 CG43161-PC 1..2352 17..2368 11760 100 Plus
Skeletor-RE 4512 CG43161-PE 1..2313 17..2329 11565 100 Plus
Skeletor-RB 870 CG43161-PB 1..825 17..841 4125 100 Plus
Skeletor-RE 4512 CG43161-PE 2442..2482 2328..2368 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Skeletor-RC 4905 CG43161-RC 299..2651 16..2368 11765 100 Plus
Skeletor-RE 5035 CG43161-RE 299..2612 16..2329 11570 100 Plus
Skeletor-RD 5035 CG43161-RD 299..2612 16..2329 11570 100 Plus
Skeletor-RE 5035 CG43161-RE 2741..2781 2328..2368 205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10692345..10693123 941..1719 3895 100 Plus
3R 32079331 3R 10689261..10689764 78..581 2520 100 Plus
3R 32079331 3R 10693429..10693847 1911..2329 2095 100 Plus
3R 32079331 3R 10690240..10690502 579..841 1315 100 Plus
3R 32079331 3R 10693179..10693375 1717..1913 985 100 Plus
3R 32079331 3R 10691347..10691449 839..941 515 100 Plus
3R 32079331 3R 10687241..10687303 16..78 315 100 Plus
3R 32079331 3R 10693976..10694016 2328..2368 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:54:17 has no hits.

BO28782.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:14 Download gff for BO28782.complete
Subject Subject Range Query Range Percent Splice Strand
Skeletor-RA 305..2651 22..2370 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:46 Download gff for BO28782.complete
Subject Subject Range Query Range Percent Splice Strand
Skeletor-RC 305..2651 22..2370 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:50 Download gff for BO28782.complete
Subject Subject Range Query Range Percent Splice Strand
Skeletor-RC 305..2651 22..2370 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:50 Download gff for BO28782.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10693181..10693374 1719..1912 100 -> Plus
3R 10687247..10687302 22..77 100 -> Plus
3R 10689261..10689764 78..581 100 -> Plus
3R 10690243..10690502 582..841 100 -> Plus
3R 10691350..10691449 842..941 100 -> Plus
3R 10692346..10693122 942..1718 100 -> Plus
3R 10693431..10693847 1913..2329 100 -> Plus
3R 10693978..10694016 2330..2370 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:46 Download gff for BO28782.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6512969..6513024 22..77 100 -> Plus
arm_3R 6514983..6515486 78..581 100 -> Plus
arm_3R 6515965..6516224 582..841 100 -> Plus
arm_3R 6517072..6517171 842..941 100 -> Plus
arm_3R 6518068..6518844 942..1718 100 -> Plus
arm_3R 6518903..6519096 1719..1912 100 -> Plus
arm_3R 6519153..6519569 1913..2329 100 -> Plus
arm_3R 6519700..6519738 2330..2370 95   Plus

BO28782.pep Sequence

Translation from 16 to 2386

> BO28782.pep
MLAMKDKPWLLLFGLLAALSCLASFGDAAYPYYGTKIGALTRLHHGVSGD
VYAVDSRTIFIKKFNYDGEAPAAYFYVGNTARPSNEGAARLRDERGGTAS
LTRRYRNKDVTLSLPEGKTLRDIKWFSVWCDEFAVNFGDVSIPPNLDFPR
PQKISALRGVHGVSSDNIVIVDAQTLLVPNFSYDGEAPDAKFWVGRGQRP
TSDGLRIPDENGKENPLRRYERKTIVLTLPEDLTIFDIGHFGVWCEAFTV
DFGHVRLPEGLNVPPSLKMLGISPQSKLNCEVLYDDLAFEVRWAVAGESI
VVQLVAKLEPNHYMSFGISPNKNISQMIGADAVVAWVDPQTGNGFATDYF
LEGKAQCSGGRGACPDTKISEKTNSIRLLNAAMVNGYSIVTYQRSLAATD
RLDLPISITGAESVVWAIGPLNDYQEVSFHTFYNKHLHQIEFGRQPKWNC
PLPEGARGNSNSSEQEDSAPAAQSSTGGAGYPPAGRPNVEPDEEFYENRA
EALHRQPPQRRQETAIITQRRPVPTPKPVNSNGAWDIPAIQCHEPEDGVF
YAQMGPTGGKHGYPAITGHVGWGISWYINGLLIPEIHVVRGKTYTFVVEG
GNNPDIPAKYHPFYISDDPVGGYEHKREEEKKAVRIYAGVHRSRSGQVTP
TGVGRLCNWTPDVEGPPADDYQSFGAYQRTLTLKCDAGEPGVITWKPDRN
TPDTVYYHCFTHRYLGWKIHVHDSCDSEAGGLKGAASERHEIRLPAKATV
AEPAPVHEDYAGEASVRHETKMASALLRLSRRAYASFLDH

BO28782.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Skeletor-PC 784 CG14681-PB 1..784 1..784 4230 100 Plus
Skeletor-PE 1503 CG43161-PE 1..774 1..774 4174 99.6 Plus
Skeletor-PB 289 CG14681-PA 1..287 1..287 1476 96.9 Plus
CG34355-PF 748 CG34355-PF 65..488 15..431 830 40.3 Plus
CG34355-PB 748 CG34355-PB 65..488 15..431 830 40.3 Plus
CG34355-PF 748 CG34355-PF 538..718 550..733 497 50.5 Plus