BO28784.complete Sequence
839 bp assembled on 2011-08-24
> BO28784.complete
GAAGTTATCAGTCGACATGGCCAAGTTGCTCCTTGTGATCGTTGGTGTGG
CGGCCCTAGTGGCAGCGGGACAGGCGGCCGGTGGCTCCACCGAAAAGATG
CAGAGGCTTATCGCCGAGGAGCAAAACAAGTGCGCCAGTGGCCAAGACTC
GATGGCCTGCATCAAAGAGCGGGCCATGCGGTTTGTGGACAACGTGATGA
GCAAAGACAGCTTCCAGGTTTCCAACCTGGAAGTCCGCTCCAATGGAGAG
AAGACCACGCCTATCAACGAAGCTCGTGCCAGCAGTGCCGACGGATTTCT
GGACGCCATTGAGAACTATATCCGTGGACACGACGTGAGCATGGACTTGC
CCTTGGCCGATGCCAAGGTCACCGTCTCGGCCCGCAACCTGGTTAACAAT
CAGCTGAGCCTGAACCTCCAGCTGAACGGCGACGATGGCGATGAGGGCAC
CGATGTCGAAGCCAGGGGCAAGAAACACCGTCTCCGCAAGCTGGCCATGC
CCATCCTGGTGCTCATCCTGCTGAAGGCCATCACAGTGATCCCCATGGCC
ATTGGCATCCTGAAGATCAAGGCCTTCAACGCCCTGGCCCTGGGCTTCTT
CTCCTTCATTGTCTCGGTTGGTTTGGCCATTTTCCAATTGTGCAAAAAGA
TTGCTCATGATCACCATCACACCGCCCACATCACCGCCCATGGTCCTTGG
GACGGCCGCACCTTTAGCTCCGTTCCTGCCCCCGTTGTCGAGCAGCCCCA
GAAGTTGGGGCAAGCCCTGGCTTACCAGGCCTACGCTGCAAGCTTTCTAG
ACCAATTCGTTGTGGCGCGGCGAGGGCGGGCGGAGGGGT
BO28784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi19-RB | 774 | CG15189-PB | 1..771 | 17..787 | 3855 | 100 | Plus |
| Osi19-RA | 801 | CG15189-PA | 1..458 | 17..474 | 2275 | 99.8 | Plus |
| Osi19-RA | 801 | CG15189-PA | 477..798 | 466..787 | 1610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi19-RB | 1111 | CG15189-RB | 82..852 | 17..787 | 3855 | 100 | Plus |
| Osi19-RA | 1138 | CG15189-RA | 82..539 | 17..474 | 2275 | 99.8 | Plus |
| Osi19-RA | 1138 | CG15189-RA | 558..879 | 466..787 | 1610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6335920..6336178 | 216..474 | 1280 | 99.6 | Plus |
| 3R | 32079331 | 3R | 6335443..6335645 | 17..219 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 6336279..6336461 | 467..649 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 6336798..6336937 | 648..787 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:18:38 has no hits.
BO28784.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:16 Download gff for
BO28784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi19-RB | 80..850 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:38 Download gff for
BO28784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi19-RB | 82..852 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:00 Download gff for
BO28784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi19-RB | 82..852 | 17..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:00 Download gff for
BO28784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6335443..6335643 | 17..217 | 100 | -> | Plus |
| 3R | 6335922..6336171 | 218..467 | 100 | -> | Plus |
| 3R | 6336280..6336461 | 468..649 | 100 | -> | Plus |
| 3R | 6336800..6336937 | 650..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:38 Download gff for
BO28784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2162002..2162183 | 468..649 | 100 | -> | Plus |
| arm_3R | 2162522..2162659 | 650..787 | 100 | | Plus |
| arm_3R | 2161165..2161365 | 17..217 | 100 | -> | Plus |
| arm_3R | 2161644..2161893 | 218..467 | 100 | -> | Plus |
BO28784.pep Sequence
Translation from 16 to 838
> BO28784.pep
MAKLLLVIVGVAALVAAGQAAGGSTEKMQRLIAEEQNKCASGQDSMACIK
ERAMRFVDNVMSKDSFQVSNLEVRSNGEKTTPINEARASSADGFLDAIEN
YIRGHDVSMDLPLADAKVTVSARNLVNNQLSLNLQLNGDDGDEGTDVEAR
GKKHRLRKLAMPILVLILLKAITVIPMAIGILKIKAFNALALGFFSFIVS
VGLAIFQLCKKIAHDHHHTAHITAHGPWDGRTFSSVPAPVVEQPQKLGQA
LAYQAYAASFLDQFVVARRGRAEG
BO28784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi19-PB | 257 | CG15189-PB | 1..257 | 1..257 | 1288 | 100 | Plus |
| Osi19-PA | 266 | CG15189-PA | 1..266 | 1..257 | 1268 | 96.6 | Plus |
| Osi7-PA | 288 | CG1153-PA | 29..243 | 17..225 | 199 | 26.5 | Plus |
| Osi18-PA | 306 | CG1169-PA | 8..227 | 7..225 | 178 | 25.2 | Plus |
