BO28787.complete Sequence
1162 bp assembled on 2011-08-24
GenBank Submission: KX796415
> BO28787.complete
GAAGTTATCAGTCGACATGTGGCAGACACTATCAACTTTTAGCACATCAC
TCAGAGCAGCAGCAGCAGCAGTGGCAGCACAACCAGCAGCAACTTGCAAC
TGTAGCTGCAAGCTGGAAAACGCGGAAATGCACAGTCACATGTTGCCATC
AGCAGAGATTGCGACAACGGCAGTGCGTAGGTGTTGCTGTCGCACAAAAA
TCACCCGCAGCAACAGCAGCAACTATAGTTGCAACTACGGCAGCAACGTG
ATCCAGTGGCTACTGCTACTGTGCCTTTTCTGTGATTTTGGCCAGGCCGC
GCTGCGTGACGTAAATCTGCTGGTGGAGCCTCCGGCGGTGCGAAGGGGTC
AGTCTGTGGCCCTGCGGTGCGATTACCAATTGGTGGAGGCGCCCCTGTAT
TCCATTAAGTTTTACCGCGGCCAGATGGAATTCTACCGCTACACACCAGG
CGAGTATCCGCCAACCAAGGTCTTTCAGTTCCCCGGCATCAGAGTGGACG
AGAACGGCTCGAATGCCACCACCGTGCTCATCCGCAACGTTAGCTTCGGC
CTGTCCGGACAATTCAGCTGCGAGGTTACGGCGGATGCCCCGCTCTATTC
CACGGCCACAGCCTTCGCCCAGATGCAAGTTGTGGAATTTCCGGAGAAGC
GACCGCAGCTTTTTACGGAACACTCGCGATACGAACCAGGAGATGTTTTG
CGTGCAAATTGCAGTACTTTGCCATCTCGGCCTCGAGCTGATCTTCGTTT
CACCATCAACAATATTCCCGTCAGCACGGAGGAAACGCAGTACATTCGAA
CGGTTGACAGCCTGATTGCATCCCGGCTCAGTCTGAAGCTGCAGCTGCAG
GCGACTCACTTTGTGGCTGGGCTCAGTGCCCATGGAAATGGGAACGGGAA
TGGTAATGGCAATGGAAATGGCAACGGCAATGGCCTGGCGAACGCACTGC
ACCTGGGTGGCGGCGGCGGAGGCGCTGGAGGCGGAGGACTCATCCTGCGT
TGTACGGCGCAAATTGGCGATCTCTATCAGGAGTACAAGGAAATAGAGCT
GGGCACACCGCAAAAGGATCCGGTGCCGGCCAGAGGTAAGCCTCAAAAGG
ATAACTGCCGACAGCCACGAAGCACTGAAAAGAAAATATTTCCGGCAAGC
TTTCTAGACCAT
BO28787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIb-RC | 1215 | CG4135-PC | 1..1069 | 17..1085 | 5345 | 100 | Plus |
| beat-IIb-RA | 1224 | CG4135-PA | 1..1078 | 17..1085 | 5205 | 99.1 | Plus |
| beat-IIa-RB | 1296 | CG14334-PB | 232..614 | 332..714 | 415 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIb-RC | 2442 | CG4135-RC | 721..1789 | 17..1085 | 5345 | 100 | Plus |
| beat-IIb-RA | 2070 | CG4135-RA | 340..1417 | 17..1085 | 5205 | 99.1 | Plus |
| beat-IIa-RB | 2829 | CG14334-RB | 983..1365 | 332..714 | 415 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17233173..17233547 | 1144..770 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 17247271..17247538 | 284..17 | 1340 | 100 | Minus |
| 3R | 32079331 | 3R | 17239692..17239908 | 500..284 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 17238911..17239047 | 771..635 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 17239478..17239613 | 635..500 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 17321211..17321296 | 1090..1005 | 280 | 88.4 | Minus |
| 3R | 32079331 | 3R | 17332505..17332662 | 489..332 | 220 | 75.9 | Minus |
Blast to na_te.dros performed 2014-11-27 07:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6938 | 29..266 | 201 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2567 | 45..276 | 185 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2272..2421 | 103..247 | 171 | 60.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1041..1151 | 126..238 | 163 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6832 | 134..258 | 142 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..2880 | 41..275 | 141 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1101..1148 | 200..247 | 141 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2367 | 192..247 | 136 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1136 | 207..247 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6767 | 193..247 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6829 | 147..246 | 131 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6842 | 193..247 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2826 | 27..247 | 128 | 53.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6788 | 200..247 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6809 | 200..247 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6776 | 192..247 | 120 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6797 | 193..247 | 115 | 70.9 | Plus |
BO28787.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:17 Download gff for
BO28787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIb-RB | 339..1466 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:58 Download gff for
BO28787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIb-RC | 721..1789 | 17..1085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:15 Download gff for
BO28787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIb-RC | 721..1789 | 17..1085 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:15 Download gff for
BO28787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17239693..17239907 | 285..499 | 100 | <- | Minus |
| 3R | 17247271..17247538 | 17..284 | 100 | | Minus |
| 3R | 17233171..17233547 | 770..1146 | 99 | <- | Minus |
| 3R | 17238913..17239046 | 636..769 | 100 | <- | Minus |
| 3R | 17239478..17239613 | 500..635 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:58 Download gff for
BO28787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13072993..13073260 | 17..284 | 100 | | Minus |
| arm_3R | 13058893..13059269 | 770..1146 | 99 | <- | Minus |
| arm_3R | 13064635..13064768 | 636..769 | 100 | <- | Minus |
| arm_3R | 13065200..13065335 | 500..635 | 100 | <- | Minus |
| arm_3R | 13065415..13065629 | 285..499 | 100 | <- | Minus |
BO28787.pep Sequence
Translation from 16 to 1162
> BO28787.pep
MWQTLSTFSTSLRAAAAAVAAQPAATCNCSCKLENAEMHSHMLPSAEIAT
TAVRRCCCRTKITRSNSSNYSCNYGSNVIQWLLLLCLFCDFGQAALRDVN
LLVEPPAVRRGQSVALRCDYQLVEAPLYSIKFYRGQMEFYRYTPGEYPPT
KVFQFPGIRVDENGSNATTVLIRNVSFGLSGQFSCEVTADAPLYSTATAF
AQMQVVEFPEKRPQLFTEHSRYEPGDVLRANCSTLPSRPRADLRFTINNI
PVSTEETQYIRTVDSLIASRLSLKLQLQATHFVAGLSAHGNGNGNGNGNG
NGNGNGLANALHLGGGGGGAGGGGLILRCTAQIGDLYQEYKEIELGTPQK
DPVPARGKPQKDNCRQPRSTEKKIFPASFLDH
BO28787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIb-PC | 404 | CG4135-PC | 1..356 | 1..356 | 1875 | 100 | Plus |
| beat-IIb-PA | 407 | CG4135-PA | 1..359 | 1..356 | 1861 | 99.2 | Plus |
| beat-IIa-PB | 431 | CG14334-PB | 56..319 | 84..356 | 901 | 65.7 | Plus |
| beat-IIa-PA | 431 | CG14334-PA | 56..319 | 84..356 | 901 | 65.7 | Plus |
| beat-Ia-PA | 427 | CG4846-PA | 25..261 | 94..367 | 398 | 36.1 | Plus |
