BO28788.complete Sequence
1453 bp assembled on 2011-08-24
GenBank Submission: KX799957
> BO28788.complete
GAAGTTATCAGTCGACATGTCGAGGTTGAGCAGAGCGCTGCAGCTTACAG
ATATAGATGATTTTATTACGCCCTCACAGCCCGTGCAAATAGATAAGGCA
AGGTCAAAGACTGGGGCAAAGATAAAGATAAAAGGTGACGGCTGCTTTGA
GGAATCAGAGAGTGGAAATCTAAAACTTAATAAAGTTGATATTTCTCTGC
AAGACTGTCTTGCGTGTTCTGGTTGCATCACTTCAGCTGAAGAAGTCCTT
ATCACGCAGCAGAGCCGAGAAGAGTTGCTTAAGGTCCTTCAAGAGAATTC
AAAGAATAAGGCCTCTGAAGACTGGGATAACGTGCGTACGATCGTGTTCA
CCCTTGCCACCCAGCCTATACTAAGCTTAGCCTATCGCTATCAGATAGGT
GTGGAGGATGCTGCCCGTCATCTTAATGGGTATTTTCGCAGTTTGGGTGC
CGACTATGTTTTGTCCACTAAGGTGGCGGACGATATTGCGCTGCTCGAAT
GTCGTCAAGAATTTGTAGATAGGTACCGCGAAAATGAGAACTTGACCATG
CTTAGCTCCTCTTGTCCGGGGTGGGTTTGTTACGCGGAGAAAACACACGG
AAACTTCTTATTGCCTTACGTTTCCACGACCCGATCTCCTCAGCAAATAA
TGGGAGTGCTTGTGAAGCAAATCCTTGCCGATAAGATGAATGTTCCTGCG
TCACGAATCTACCATGTGACCGTGATGCCTTGCTACGACAAGAAGCTTGA
GGCCTCTCGAGAGGACTTTTTCAGCAAGGCAAATAACTCACGCGACGTAG
ACTGTGTAATCACTTCAGTTGAGGTGGAACAGTTGCTTAGTGAGGCTCAG
CAGCCGCTGTCGCAGTACGATCTCCTTGATTTAGACTGGCCATGGTCTAA
TGTACGCCCAGAATTCATGGTATGGGCTCACGAGAAGACGCTATCTGGCG
GTTACGCAGAACACATATTTAAGTACGCCGCAAAACATATTTTCAACGAA
GATTTAAAAACAGAGTTGGAATTCAAACAGCTCAAAAACCGCGACTTTAG
AGAAATTATACTTAAACAGAATGGCAAAACTGTCCTGAAATTTGCAATTG
CTAACGGTTTCCGGAACATACAAAACTTGGTACAAAAACTGAAGCGTGAA
AAGGTATCAAATTACCACTTTGTTGAGGTAATGGCCTGTCCCTCGGGCTG
TATAAACGGAGGAGCACAAATACGTCCCACTACCGGACAGCACGTTCGCG
AGCTTACCCGGAAACTGGAGGAATTATACCAGAATCTTCCACGGTCCGAA
CCCGAAAACTCCTTAACAAAACATATTTACAATGACTTTTTAGACGGCTT
TCAAAGTGATAAATCATATGACGTGCTGCACACCCGTTACCATGATGTAG
TATCTGAGCTCAGTATATCGCTTAATATAAATTGGGCAAGCTTTCTAGAC
CAT
BO28788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RC | 1422 | CG17683-PC | 1..1419 | 17..1435 | 7095 | 100 | Plus |
| CG17683-RA | 1434 | CG17683-PA | 1..1431 | 17..1435 | 6940 | 99.2 | Plus |
| CG17683-RD | 1293 | CG17683-PD | 14..1290 | 159..1435 | 6385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RC | 1785 | CG17683-RC | 88..1507 | 16..1435 | 7100 | 100 | Plus |
| CG17683-RA | 1696 | CG17683-RA | 88..1519 | 16..1435 | 6945 | 99.2 | Plus |
| CG17683-RD | 2403 | CG17683-RD | 296..1572 | 159..1435 | 6385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4131320..4131979 | 159..818 | 3300 | 100 | Plus |
| 2R | 25286936 | 2R | 4132034..4132653 | 816..1435 | 3100 | 100 | Plus |
| 2R | 25286936 | 2R | 4131186..4131268 | 78..160 | 415 | 100 | Plus |
| 2R | 25286936 | 2R | 4131061..4131124 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2352..2448 | 238..143 | 122 | 59.8 | Minus |
BO28788.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:18 Download gff for
BO28788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RE | 70..132 | 17..79 | 100 | -> | Plus |
| CG17683-RE | 196..1551 | 80..1437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:13 Download gff for
BO28788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RC | 89..1507 | 17..1437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:23 Download gff for
BO28788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RC | 89..1507 | 17..1437 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:23 Download gff for
BO28788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4131062..4131124 | 17..79 | 100 | -> | Plus |
| 2R | 4131188..4131268 | 80..160 | 100 | -> | Plus |
| 2R | 4131322..4131979 | 161..818 | 100 | -> | Plus |
| 2R | 4132037..4132653 | 819..1437 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:13 Download gff for
BO28788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18567..18629 | 17..79 | 100 | -> | Plus |
| arm_2R | 18693..18773 | 80..160 | 100 | -> | Plus |
| arm_2R | 18827..19484 | 161..818 | 100 | -> | Plus |
| arm_2R | 19542..20158 | 819..1437 | 99 | | Plus |
BO28788.pep Sequence
Translation from 16 to 1453
> BO28788.pep
MSRLSRALQLTDIDDFITPSQPVQIDKARSKTGAKIKIKGDGCFEESESG
NLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSKNKAS
EDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGADYVLS
TKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKTHGNFLLP
YVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEASRED
FFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNVRPEF
MVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFREIILK
QNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCINGGA
QIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLDGFQSDKS
YDVLHTRYHDVVSELSISLNINWASFLDH
BO28788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-PC | 473 | CG17683-PC | 1..473 | 1..473 | 2462 | 100 | Plus |
| CG17683-PA | 477 | CG17683-PA | 1..477 | 1..473 | 2447 | 99.2 | Plus |
| CG17683-PD | 430 | CG17683-PD | 5..430 | 48..473 | 2223 | 99.8 | Plus |
| CG17683-PE | 296 | CG17683-PE | 1..296 | 178..473 | 1567 | 100 | Plus |
