BO28789.complete Sequence
2056 bp assembled on 2011-09-19
GenBank Submission: KX795296
> BO28789.complete
GAAGTTATCAGTCGACATGTTCACCGAAAAGGGAATTTTTCCCATTGGCG
ACGGACTTTTGGATGTGGACGCCGATCGGCTGAAGGGACTCCTCGTCTCA
TGTCCCGACATCAACGAGATCTACGAAGTGGAACAGACGCCGTTTGCCAG
GGGCAAATTCGCCGCCGTTCGACGCGCCATTCACAAGAACACGGGCTCGC
ACTTTGCGGCAAAGTTCCTGAAGCGGAGGCGCCGGGCGCAGAGTAGCGAC
AAGGAGATCAAGCACGAGATCGCGGTGCTGATGCTCTGCGAGGGCGAGGA
CAACATCGTCAACCTCAATGCCGTTCACGAGACGCGCTCGGACACAGCAC
TCCTCCTCGAGCTAGCCACTGGTGGCGAGCTGCAGACGATCCTGGACAAC
GAGGAGTGCCTGACGGAGGCGCAGGCCCGCCACTGCATGCGCGAGGTGCT
CAAGGCGCTGAAGTTCCTGCACGATCGCTCCATTGCCCATTTGGACCTCA
AGCCGCAGAACATCCTGCTCGCCGGCGAGCGCATAGAAGATGGATTGAAG
CTGTGCGACTTTGGGATCTCGCGGGTGGTGTGCGAGGGCATCAATGTGCG
GGAAATGGCCGGAACACCAGACTACGTGGCCCCCGAGGTGCTGCAATACG
AGCCGCTGTCCCTGCTGACGGACATCTGGTCGGTGGGCGTGCTCACCTAC
GTGCTGCTATCCGGATTCTCGCCCTTTGGCGGCGACACCAAACAGGAGAC
CTTCCTCAACATCTCGCAGTGCGCCCTCACCTTTCCGGACAACCTCTTCG
GCGGCGTCTCGCCGGTGGCCATCGACTTCATCCGTCGCGCATTGCGAATT
AAGCCAAACGATCGCATGAATGCCACTGGCTGCTTGGATCACATTTGGTT
GAAGGACGACTGCTCGCTGGACAGACAGATTTATCTGCAGCCCCAGAGCG
ATGCCGAAGAGGAGGAAGAGGAGGATGTCGACGACGATGTGGAGGACGAG
GAAGAGGAGGAGCAGGTGGAGGAGGAGGAGGAGGAGACACAGAACGTGGA
GGAGCCAACGACAGAAGCGCCACAACAACAGCAACAACCTGTCCAGCAGC
ATCAGCTAGCCAAATCCGGCCAAATTCACAGCAAACCGACGCACAATGGC
CACCATCGGGCAAACAGTGGCGGCAGCATCTCCAAGATACCCATTGCGAC
AAGCAAACTGCAGAGCACTCCCAGCTCCGAGACCACCACGGCCATCCACA
CGCTGACCAGCAACAGCAATGGACACGTCCACAAGCCCACTCAGATTGTG
ACGCCAACGCGAAGAGCCTCGGATTCGGACAAGGAGAACACGTATACGGC
CACGTTTGTAAAGAAGCCAGTCGCCACCATCCAGCTGGGCAGCTCCAATG
GCATCGAGGATGCCACGGTTGTGGCCACACTCACTCTGTTTCCCGACGCA
CCCACCACACCAAAGGTGATTCGCAAGACGCCGACGGGTGAGTCGAATGG
CTCGGCAACGTCTGTCAAGGCTCTGGTGAAGAAATTTCAACTGGAGGACT
CGAGCGGTTCGGCGGTGGCACGACGCAGTGGAGGAGCGGTGACCAGCAGC
AGTGGACTGCATTCGCCAACGACGACATCGGTCAGGTTGAATAGCATTCG
TCGCGCCTCGGAGCCGCTGACCACGGTCTACAAGAAGCAGACGTCACAGA
ATGGATGCAGCAGCACTTCGAATCCGAGCTCAAGTCCCGGCAGCAGTCCC
ACCACATCCGGCAGCACCGCCACTCTGCTGATCCACAGTCAGCGTTTGGG
CAACAGCACAGCGCCGGCGAGCCACTGCGTCGCCGTTCCAGCAACAGCCA
CAGCCACCTCCTCCGCCAGCAGCAGCAACAGCAGCTCAGGGAAGTCAACA
AGTGCCGCCCACCATTTGCACCATCATCATATGCACCACCATCATCATCA
CCACCACCATCATGTGGTGATTGCGGCAAAGAATGCCGCTGCCGTGGCCG
CCACCAACAACTTGAGCCTGGATCAGGGTATCATCTGTGCAAGCTTTCTA
GACCAT
BO28789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drak-RD | 2025 | CG32666-PD | 1..2022 | 17..2038 | 10110 | 100 | Plus |
| Drak-RC | 2025 | CG32666-PC | 1..2022 | 17..2038 | 10110 | 100 | Plus |
| Drak-RE | 2025 | CG32666-PE | 1..2022 | 17..2038 | 10110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drak-RD | 4847 | CG32666-RD | 732..2753 | 17..2038 | 10110 | 100 | Plus |
| Drak-RC | 4525 | CG32666-RC | 410..2431 | 17..2038 | 10110 | 100 | Plus |
| Drak-RE | 4163 | CG32666-RE | 48..2069 | 17..2038 | 10110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11551772..11552951 | 859..2038 | 5900 | 100 | Plus |
| X | 23542271 | X | 11551027..11551347 | 538..858 | 1605 | 100 | Plus |
| X | 23542271 | X | 11550474..11550689 | 148..363 | 1080 | 100 | Plus |
| X | 23542271 | X | 11550762..11550937 | 364..539 | 880 | 100 | Plus |
| X | 23542271 | X | 11493866..11494000 | 17..151 | 675 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2480 | 991..1159 | 177 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6945 | 1738..1906 | 170 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2513 | 1053..1269 | 160 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6894 | 1011..1187 | 152 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6968 | 1048..1283 | 129 | 56.1 | Plus |
BO28789.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:15 Download gff for
BO28789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drak-RD | 192..2208 | 22..2040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:59 Download gff for
BO28789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drak-RE | 164..2180 | 22..2040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:17 Download gff for
BO28789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drak-RE | 53..2069 | 22..2040 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:17 Download gff for
BO28789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11493871..11493999 | 22..150 | 100 | -> | Plus |
| X | 11550477..11550689 | 151..363 | 100 | -> | Plus |
| X | 11550762..11550937 | 364..539 | 100 | -> | Plus |
| X | 11551029..11551347 | 540..858 | 100 | -> | Plus |
| X | 11551772..11552951 | 859..2040 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:59 Download gff for
BO28789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11387904..11388032 | 22..150 | 100 | -> | Plus |
| arm_X | 11444510..11444722 | 151..363 | 100 | -> | Plus |
| arm_X | 11444795..11444970 | 364..539 | 100 | -> | Plus |
| arm_X | 11445062..11445380 | 540..858 | 100 | -> | Plus |
| arm_X | 11445805..11446984 | 859..2040 | 99 | | Plus |
BO28789.pep Sequence
Translation from 16 to 2056
> BO28789.pep
MFTEKGIFPIGDGLLDVDADRLKGLLVSCPDINEIYEVEQTPFARGKFAA
VRRAIHKNTGSHFAAKFLKRRRRAQSSDKEIKHEIAVLMLCEGEDNIVNL
NAVHETRSDTALLLELATGGELQTILDNEECLTEAQARHCMREVLKALKF
LHDRSIAHLDLKPQNILLAGERIEDGLKLCDFGISRVVCEGINVREMAGT
PDYVAPEVLQYEPLSLLTDIWSVGVLTYVLLSGFSPFGGDTKQETFLNIS
QCALTFPDNLFGGVSPVAIDFIRRALRIKPNDRMNATGCLDHIWLKDDCS
LDRQIYLQPQSDAEEEEEEDVDDDVEDEEEEEQVEEEEEETQNVEEPTTE
APQQQQQPVQQHQLAKSGQIHSKPTHNGHHRANSGGSISKIPIATSKLQS
TPSSETTTAIHTLTSNSNGHVHKPTQIVTPTRRASDSDKENTYTATFVKK
PVATIQLGSSNGIEDATVVATLTLFPDAPTTPKVIRKTPTGESNGSATSV
KALVKKFQLEDSSGSAVARRSGGAVTSSSGLHSPTTTSVRLNSIRRASEP
LTTVYKKQTSQNGCSSTSNPSSSPGSSPTTSGSTATLLIHSQRLGNSTAP
ASHCVAVPATATATSSASSSNSSSGKSTSAAHHLHHHHMHHHHHHHHHHV
VIAAKNAAAVAATNNLSLDQGIICASFLDH
BO28789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drak-PD | 674 | CG32666-PD | 1..674 | 1..674 | 3473 | 100 | Plus |
| Drak-PC | 674 | CG32666-PC | 1..674 | 1..674 | 3473 | 100 | Plus |
| Drak-PE | 674 | CG32666-PE | 1..674 | 1..674 | 3473 | 100 | Plus |
| sqa-PD | 888 | CG42347-PD | 42..632 | 45..631 | 480 | 26 | Plus |
| sqa-PC | 888 | CG42347-PC | 42..632 | 45..631 | 480 | 26 | Plus |
