Clone BO28790 Report

Search the DGRC for BO28790

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:287
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptPvr-RG
Protein status:BO28790.pep: Imported from assembly
Sequenced Size:4438

Clone Sequence Records

BO28790.complete Sequence

4438 bp assembled on 2011-09-20

GenBank Submission: KX799974

> BO28790.complete
GAAGTTATCAGTCGACATGGCGATGCTTCCGCGGTTGATTCTGCTGCCAC
TGCTCCTGATTTTGCGGATCTCGTGGAGCGATGCTGTGCCTTTGCAGCAG
TTCTCACCGGATCCCGATGACAGCATCGAGAACTGCGGCGGCGAGAATGG
AGCTCCCCTGATGACGCCCTGCAAGAGCGCCATTATCCTGGATGCCCAGA
CGAGCACCACGCTTAAGTGCGAGGACGACGAGCCGATGAGCTGGTGGACC
AGTCAATCGCAATATGTGCATGTGAAGTCCTTCGATAATACGGAGGATCC
GGCTCGACCATTCGGAACTAGCCTGCATCTCATCGAAGTGACGGCTGACT
ATGTGGCAGCCTACTATTGCGTGAAGACTTCGAAATTCAGTCAGATCGCC
AAGGAGGAGCAGTCGGACGAGGCGATGATCGAATTGGTTAATCAAGGATA
CGCCAGCTCCATCTACGTGTACGTGAATGATCCGGACACTAAGCTGGTCG
ATAGTCATAACGTGGTGACGGCACGCCAGTATACCGACGTAGTCATACCC
TGTAAACCAGCCATGCCGGACACAGAGGTGCTGCTAGAGACCAGTAATGG
AGAAATGCATTCCAGCAAATCTGTCGGTCGATACGATCCGCAACGGGGAT
TCACCATCGAAATCCGAAGCATCGTGGATGGCGGAGACTACTACTGCCGA
CCCAATCCGCCATTCCCGCATAACGAAGAGGAGATGACCAGCATAGAAGT
GCGCTTTATTGAAGACGGCAAACCGCTGCCAAAGCCCGTGATCAGGTCCT
CCGTGGAGCATCACGTCTTCACGGACACCAACTTCACCCTGGATTGCGAG
CAGTCCGCCTACGTTGAATCAGTATACGGAATGGAATGGTTCACTCCGTC
CCGGGATGAGAATCGCATATTTGCCTCCCAATCAAGAACCGATCCCAAGA
CCAGGAACAGCACCCATCAGACGGGCAGGAGCACCTTGACAGTGCTAAAT
GCACAACCCTCGGACACTGGTCTATACAAGTGTGTGACAACAGATAATTC
TAACCAGAACGTACAACGTGCCACCTACAGGATTAAGGTGCTAAAGCAAA
ACGAAAGTTACCTGAACGTGGGCGAACCATCGGGTCATTACAACGTTCAG
GAATATGCCAATCGCACGATCCAAATGACCGCGAACTTTGAGGGATTTCC
GACGCCCTCCTTCAGTTGGTTCAAACCCGATGGCACCGAGGTGCGACAAT
CGGAGAATAACTTCAAGATTCTCTCCACGGAATTGAGCACAATGCTCCAG
GTGCTGAACGCCCAATTGCAGGACAGCGGCACGTATGTCCTCCGTGGATC
CAATTCCTTCGGCGTCGTTCAGCGGGAGTACAACGTCAGTGTGATGGACG
CACCGGCGCTGAAGATGTCGGACGCCTATGTCCAGGTGGGATCCGTGGCG
CGACTGGAGTGCACAGTACGCTCCTATCCGCCGGCTATCGTGACCTTCTT
CTTCCGCCCCTGCAGCCTGGAACCACAGTGGCCCACTTGCTCTGTGCTCA
ATCAGAACTTTAGCTTGCCGAGTGAACAGGAGAAATATCAGTTCCAGACC
CGGCCCAGACCCGGAAAGCTGAGTGTGGAACGCATATACGAGGTATCCTT
CCTGCCCACGGAGCCGGGAATCCTCACATGCATTGCCCAAAATATCATTG
ATGGAAAGGAACGAAGAACCCTGACGAAGGCGCACGTTCTGCTGGGCAAC
ATTTCCGAGAACATGACCATATATGGCTTCGATAAGGATCACAAAATCGC
CAAGGAGGACAATGTGAACTTCACCTGCGAGGCGCTGGCCTATCACTTCG
ATGGAAATCTTAAATGGTTCATCAATGGAGAGGATTTGAAGGAGTCGGAT
TCGGTTCACATTGAGACCAGCCATACCAAGTACTCCTACAAGAGCACTGT
ACACATCACAACGATATCCGACAGGGATCGTGGAACCTATGAGTGCCGGG
CCTACCACAACGACAAGGATGCCGTTTACAGCAGCCGGGAGATAGACTTG
TACGTCCACGATCCCTCTGCTCCTCAGTGGACAAACGGCGGACAGGAGGG
TCACTCGAAAATAAAGCGCAAACTAAGCCAAACGCTGGAGCTGGAGTGTG
CCTCCACAGCGGTTCCCGTGGCAATTGTGCGTTGGTTTAAGGACGACAAG
GAAGTGACCGAATCAAAGCTCAGGCACATCATTGAAAAGGAATCCAAGCT
GCTGATCACTCACCTGTATCCCGGAGATGAAGGCGTCTACAAGTGTGTGG
TGGAGAACCGATTGGACAGAATCGAACGCTCCTTCACGGTAGTGATATCA
GATCTGCCCGGCATTAGCATGGCCTGGGTGTGGTTCGGTGTGATACTATT
CCTCATCCTGATCGGTCTGTGCGTCTTCCTCGCCGTGCGCTACCAGAAGG
AGCACAAGCGGCATCTGGCCCTTAAGGCAGCCGGATTGGCCAACTTCGAG
GAGGGCGCCGTGGGACACATCAATCCCGATCTGACCCTGGACGAGCAGGC
GGAACTGCTGCCCTACAATCGGGAATTCGAGTTCCCACGGGAAAACCTGA
AACTGGGCAAGCAACTCGGAGCCGGAGCATTTGGCGTTGTGCTCAAGGGC
GAGGCCAAGGGCATCCGGCGAGAGGAGCCCACCACCACGGTGGCCGTCAA
AATGGTCAAGGCGACGGCTGACAACGAGGTGGTGCGGGCACTGGTCTCCG
AGCTCAAGATCATGGTACATCTGGGACAGCACTTGAATGTGGTCAATCTC
CTGGGTGCAGTTACCAAAAATATTGCGAAGCGCGAACTAATGGTCATTGT
GGAATACTGTCGCTTTGGCAACATACAGAACTTCCTTCTGAGGAACAGAA
AGTGCTTTATCAATCAAATCAATCCAGACACCGATCACATTGACCCCAGC
ATCATGACCCAGCGCATGTCCGACAACTACGAACTGCACCGAAATTCGGA
CAATGATCCCCGATCGGGCACCCGAGCCGGACGAACCGGATCCGGAACAG
CCACCTACAGCTACGACCGTCAGATGGATACCTGTGCCACCGTAATGACC
ACCGTCCCAGAAGACGATCAAATAATGTCCAATAACTCCGTACAACCCGC
CTGGCGTTCCAATTACAAAACCGACTCCACGGAGGCGATGACAGTGACCA
CTGTGGATTTGATCAGTTGGGCATTCCAAGTGGCAAGGGGCATGGATTAC
TTGTCCTCCAAGAAGGTGTTGCACGGCGATCTGGCCGCTAGAAATATTCT
CCTCTGCGAGGACAATGTGGTAAAGATTTGTGACTTTGGTCTGGCTCGAT
CCATGTATCGAGGTGATAACTACAAGAAGTCAGAGAATGGCAAATTGCCC
ATCAAGTGGCTGGCGCTGGAATCGCTGAGCGATCATGTGTTCAGCACATA
CAGCGATGTTTGGTCCTACGGAATTGTTCTATGGGAGATGTTCTCGCTGG
CCAAGGTGCCGTATCCGGGCATCGATCCCAACCAAGAGCTATTTAACAAA
CTGAACGATGGCTACCGCATGGAGAAGCCGAAATTTGCCAACCAGGAGCT
CTACGAGATTATGCTAGAGTGCTGGCGAAAGAATCCCGAGAGCAGACCTT
TGTTTGCTGAGCTGGAGAAGCGATTTGCAAACATGCTGGGCGAGGATGTA
GCCAGCCACTACCTGGACCTAAACAATCCGTACATGCAGAGCAACATTGA
GTACATGAAGAAGCAGTCTACGGATTACCTGGCACTGATGGGATCACCCG
ACGAGCTGGCGCCTGCAGCTCCGCGCTACGTGAACGGGCACATAGTGCCC
GATATACGCATCGAAGAGCTGCCGGATGACTACATGGAGATGAGCCGGGA
TTCTGATCCCGATGCCTGCACCGCCATATTCTCACCCACACGCCTCGAGG
GCGAGTCCTCAGACTTTCCGGATTTCTCTAGCGAAACCACTTTCAATTTC
CCAGGGGCGCGACAGTCGCCTACGCTGAGTAACAATCTCAACAGCGGATC
GAGTAAGCCGCTCCGCAAGAAGAACGGCATGCCAACTGTGGATGTGGCAG
ATCAGGCGCCGGAGGAGATACCTATGCTGCATCGCAGCTCCACTGGATCG
GATGGAAGTCCGGAACAGGGAAGGCGCTTCAATCAGGCCCTTAAGCAGCA
GTATGTCACGCCCACACCGTCCCCTCGCCATCATGTGGAGACCAAACTCA
ATGGGGAGCCATCCGAAAACTATGTGAATATGAAGCCACCCAGGAAGAAT
ATACCCGGCAAAACCACAACAGGTGGCGGGGGTGCTGCTGCTGGAGCCTC
CACGGAGGCCTTCTCGAATCCCAGCTACCAGCCACTGTCCACCGTCAACG
AGAAGGAGCAACGAAGGTATGCAAGCTTTCTAGACCAT

BO28790.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pvr-RG 4407 CG8222-PG 1..4404 17..4420 22020 100 Plus
Pvr-RH 4425 CG8222-PH 1..4422 17..4420 21805 99.6 Plus
Pvr-RE 4512 CG8222-PE 1..2975 17..2991 14875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pvr-RG 5153 CG8222-RG 325..4728 17..4420 22020 100 Plus
Pvr-RH 5788 CG8222-RH 942..5363 17..4420 21805 99.6 Plus
Pvr-RE 5311 CG8222-RE 378..3352 17..2991 14875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8221552..8222114 4420..3858 2815 100 Minus
2L 23513712 2L 8228494..8229012 604..86 2595 100 Minus
2L 23513712 2L 8224051..8224533 2832..2350 2415 100 Minus
2L 23513712 2L 8225672..8226141 1564..1095 2350 100 Minus
2L 23513712 2L 8224593..8225042 2351..1902 2250 100 Minus
2L 23513712 2L 8225106..8225418 1901..1589 1565 100 Minus
2L 23513712 2L 8222892..8223163 3383..3112 1360 100 Minus
2L 23513712 2L 8222581..8222832 3633..3382 1260 100 Minus
2L 23513712 2L 8226210..8226395 1094..909 930 100 Minus
2L 23513712 2L 8223825..8223984 2991..2832 800 100 Minus
2L 23513712 2L 8227670..8227826 761..605 785 100 Minus
2L 23513712 2L 8222225..8222376 3858..3707 760 100 Minus
2L 23513712 2L 8226458..8226607 910..761 750 100 Minus
2L 23513712 2L 8223223..8223345 3113..2991 615 100 Minus
2L 23513712 2L 8222446..8222518 3706..3634 365 100 Minus
2L 23513712 2L 8230125..8230194 86..17 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:07:56 has no hits.

BO28790.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:32 Download gff for BO28790.complete
Subject Subject Range Query Range Percent Splice Strand
Pvr-RE 274..3247 17..2990 100 -> Plus
Pvr-RE 3354..4782 2991..4422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:41 Download gff for BO28790.complete
Subject Subject Range Query Range Percent Splice Strand
Pvr-RG 325..4728 17..4422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:26 Download gff for BO28790.complete
Subject Subject Range Query Range Percent Splice Strand
Pvr-RG 325..4728 17..4422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:26 Download gff for BO28790.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8223825..8223984 2832..2991 100 <- Minus
2L 8221550..8222114 3858..4422 99 <- Minus
2L 8222226..8222376 3707..3857 100 <- Minus
2L 8222446..8222518 3634..3706 100 <- Minus
2L 8222581..8222830 3384..3633 100 <- Minus
2L 8222892..8223161 3114..3383 100 <- Minus
2L 8223223..8223344 2992..3113 100 <- Minus
2L 8224052..8224531 2352..2831 100 <- Minus
2L 8224593..8225042 1902..2351 100 <- Minus
2L 8225106..8225415 1592..1901 100 <- Minus
2L 8225486..8225512 1565..1591 100 <- Minus
2L 8225672..8226141 1095..1564 100 <- Minus
2L 8226210..8226393 911..1094 100 <- Minus
2L 8226458..8226606 762..910 100 <- Minus
2L 8227670..8227826 605..761 100 <- Minus
2L 8228494..8229011 87..604 100 <- Minus
2L 8230125..8230194 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:41 Download gff for BO28790.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8221550..8222114 3858..4422 99 <- Minus
arm_2L 8222226..8222376 3707..3857 100 <- Minus
arm_2L 8222446..8222518 3634..3706 100 <- Minus
arm_2L 8222581..8222830 3384..3633 100 <- Minus
arm_2L 8222892..8223161 3114..3383 100 <- Minus
arm_2L 8223223..8223344 2992..3113 100 <- Minus
arm_2L 8223825..8223984 2832..2991 100 <- Minus
arm_2L 8224052..8224531 2352..2831 100 <- Minus
arm_2L 8224593..8225042 1902..2351 100 <- Minus
arm_2L 8225106..8225415 1592..1901 100 <- Minus
arm_2L 8225486..8225512 1565..1591 100 <- Minus
arm_2L 8225672..8226141 1095..1564 100 <- Minus
arm_2L 8226210..8226393 911..1094 100 <- Minus
arm_2L 8226458..8226606 762..910 100 <- Minus
arm_2L 8227670..8227826 605..761 100 <- Minus
arm_2L 8228494..8229011 87..604 100 <- Minus
arm_2L 8230125..8230194 17..86 100   Minus

BO28790.pep Sequence

Translation from 16 to 4438

> BO28790.pep
MAMLPRLILLPLLLILRISWSDAVPLQQFSPDPDDSIENCGGENGAPLMT
PCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFG
TSLHLIEVTADYVAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASSIY
VYVNDPDTKLVDSHNVVTARQYTDVVIPCKPAMPDTEVLLETSNGEMHSS
KSVGRYDPQRGFTIEIRSIVDGGDYYCRPNPPFPHNEEEMTSIEVRFIED
GKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYVESVYGMEWFTPSRDENR
IFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYKCVTTDNSNQNVQ
RATYRIKVLKQNESYLNVGEPSGHYNVQEYANRTIQMTANFEGFPTPSFS
WFKPDGTEVRQSENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSFGV
VQREYNVSVMDAPALKMSDAYVQVGSVARLECTVRSYPPAIVTFFFRPCS
LEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGKLSVERIYEVSFLPTEP
GILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDHKIAKEDNV
NFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHITTI
SDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIK
RKLSQTLELECASTAVPVAIVRWFKDDKEVTESKLRHIIEKESKLLITHL
YPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGVILFLILIG
LCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGHINPDLTLDEQAELLPY
NREFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKAT
ADNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRF
GNIQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNYELHRNSDNDPRS
GTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNY
KTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDN
VVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDVWS
YGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIML
ECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSNIEYMKKQ
STDYLALMGSPDELAPAAPRYVNGHIVPDIRIEELPDDYMEMSRDSDPDA
CTAIFSPTRLEGESSDFPDFSSETTFNFPGARQSPTLSNNLNSGSSKPLR
KKNGMPTVDVADQAPEEIPMLHRSSTGSDGSPEQGRRFNQALKQQYVTPT
PSPRHHVETKLNGEPSENYVNMKPPRKNIPGKTTTGGGGAAAGASTEAFS
NPSYQPLSTVNEKEQRRYASFLDH

BO28790.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pvr-PG 1468 CG8222-PG 1..1468 1..1468 7741 100 Plus
Pvr-PH 1474 CG8222-PH 1..1474 1..1468 7720 99.5 Plus
Pvr-PE 1503 CG8222-PE 1..1503 1..1468 7695 97.7 Plus
Pvr-PL 1509 CG8222-PL 1..1509 1..1468 7674 97.2 Plus
Pvr-PD 1509 CG8222-PD 1..1509 1..1468 7674 97.2 Plus