BO28790.complete Sequence
4438 bp assembled on 2011-09-20
GenBank Submission: KX799974
> BO28790.complete
GAAGTTATCAGTCGACATGGCGATGCTTCCGCGGTTGATTCTGCTGCCAC
TGCTCCTGATTTTGCGGATCTCGTGGAGCGATGCTGTGCCTTTGCAGCAG
TTCTCACCGGATCCCGATGACAGCATCGAGAACTGCGGCGGCGAGAATGG
AGCTCCCCTGATGACGCCCTGCAAGAGCGCCATTATCCTGGATGCCCAGA
CGAGCACCACGCTTAAGTGCGAGGACGACGAGCCGATGAGCTGGTGGACC
AGTCAATCGCAATATGTGCATGTGAAGTCCTTCGATAATACGGAGGATCC
GGCTCGACCATTCGGAACTAGCCTGCATCTCATCGAAGTGACGGCTGACT
ATGTGGCAGCCTACTATTGCGTGAAGACTTCGAAATTCAGTCAGATCGCC
AAGGAGGAGCAGTCGGACGAGGCGATGATCGAATTGGTTAATCAAGGATA
CGCCAGCTCCATCTACGTGTACGTGAATGATCCGGACACTAAGCTGGTCG
ATAGTCATAACGTGGTGACGGCACGCCAGTATACCGACGTAGTCATACCC
TGTAAACCAGCCATGCCGGACACAGAGGTGCTGCTAGAGACCAGTAATGG
AGAAATGCATTCCAGCAAATCTGTCGGTCGATACGATCCGCAACGGGGAT
TCACCATCGAAATCCGAAGCATCGTGGATGGCGGAGACTACTACTGCCGA
CCCAATCCGCCATTCCCGCATAACGAAGAGGAGATGACCAGCATAGAAGT
GCGCTTTATTGAAGACGGCAAACCGCTGCCAAAGCCCGTGATCAGGTCCT
CCGTGGAGCATCACGTCTTCACGGACACCAACTTCACCCTGGATTGCGAG
CAGTCCGCCTACGTTGAATCAGTATACGGAATGGAATGGTTCACTCCGTC
CCGGGATGAGAATCGCATATTTGCCTCCCAATCAAGAACCGATCCCAAGA
CCAGGAACAGCACCCATCAGACGGGCAGGAGCACCTTGACAGTGCTAAAT
GCACAACCCTCGGACACTGGTCTATACAAGTGTGTGACAACAGATAATTC
TAACCAGAACGTACAACGTGCCACCTACAGGATTAAGGTGCTAAAGCAAA
ACGAAAGTTACCTGAACGTGGGCGAACCATCGGGTCATTACAACGTTCAG
GAATATGCCAATCGCACGATCCAAATGACCGCGAACTTTGAGGGATTTCC
GACGCCCTCCTTCAGTTGGTTCAAACCCGATGGCACCGAGGTGCGACAAT
CGGAGAATAACTTCAAGATTCTCTCCACGGAATTGAGCACAATGCTCCAG
GTGCTGAACGCCCAATTGCAGGACAGCGGCACGTATGTCCTCCGTGGATC
CAATTCCTTCGGCGTCGTTCAGCGGGAGTACAACGTCAGTGTGATGGACG
CACCGGCGCTGAAGATGTCGGACGCCTATGTCCAGGTGGGATCCGTGGCG
CGACTGGAGTGCACAGTACGCTCCTATCCGCCGGCTATCGTGACCTTCTT
CTTCCGCCCCTGCAGCCTGGAACCACAGTGGCCCACTTGCTCTGTGCTCA
ATCAGAACTTTAGCTTGCCGAGTGAACAGGAGAAATATCAGTTCCAGACC
CGGCCCAGACCCGGAAAGCTGAGTGTGGAACGCATATACGAGGTATCCTT
CCTGCCCACGGAGCCGGGAATCCTCACATGCATTGCCCAAAATATCATTG
ATGGAAAGGAACGAAGAACCCTGACGAAGGCGCACGTTCTGCTGGGCAAC
ATTTCCGAGAACATGACCATATATGGCTTCGATAAGGATCACAAAATCGC
CAAGGAGGACAATGTGAACTTCACCTGCGAGGCGCTGGCCTATCACTTCG
ATGGAAATCTTAAATGGTTCATCAATGGAGAGGATTTGAAGGAGTCGGAT
TCGGTTCACATTGAGACCAGCCATACCAAGTACTCCTACAAGAGCACTGT
ACACATCACAACGATATCCGACAGGGATCGTGGAACCTATGAGTGCCGGG
CCTACCACAACGACAAGGATGCCGTTTACAGCAGCCGGGAGATAGACTTG
TACGTCCACGATCCCTCTGCTCCTCAGTGGACAAACGGCGGACAGGAGGG
TCACTCGAAAATAAAGCGCAAACTAAGCCAAACGCTGGAGCTGGAGTGTG
CCTCCACAGCGGTTCCCGTGGCAATTGTGCGTTGGTTTAAGGACGACAAG
GAAGTGACCGAATCAAAGCTCAGGCACATCATTGAAAAGGAATCCAAGCT
GCTGATCACTCACCTGTATCCCGGAGATGAAGGCGTCTACAAGTGTGTGG
TGGAGAACCGATTGGACAGAATCGAACGCTCCTTCACGGTAGTGATATCA
GATCTGCCCGGCATTAGCATGGCCTGGGTGTGGTTCGGTGTGATACTATT
CCTCATCCTGATCGGTCTGTGCGTCTTCCTCGCCGTGCGCTACCAGAAGG
AGCACAAGCGGCATCTGGCCCTTAAGGCAGCCGGATTGGCCAACTTCGAG
GAGGGCGCCGTGGGACACATCAATCCCGATCTGACCCTGGACGAGCAGGC
GGAACTGCTGCCCTACAATCGGGAATTCGAGTTCCCACGGGAAAACCTGA
AACTGGGCAAGCAACTCGGAGCCGGAGCATTTGGCGTTGTGCTCAAGGGC
GAGGCCAAGGGCATCCGGCGAGAGGAGCCCACCACCACGGTGGCCGTCAA
AATGGTCAAGGCGACGGCTGACAACGAGGTGGTGCGGGCACTGGTCTCCG
AGCTCAAGATCATGGTACATCTGGGACAGCACTTGAATGTGGTCAATCTC
CTGGGTGCAGTTACCAAAAATATTGCGAAGCGCGAACTAATGGTCATTGT
GGAATACTGTCGCTTTGGCAACATACAGAACTTCCTTCTGAGGAACAGAA
AGTGCTTTATCAATCAAATCAATCCAGACACCGATCACATTGACCCCAGC
ATCATGACCCAGCGCATGTCCGACAACTACGAACTGCACCGAAATTCGGA
CAATGATCCCCGATCGGGCACCCGAGCCGGACGAACCGGATCCGGAACAG
CCACCTACAGCTACGACCGTCAGATGGATACCTGTGCCACCGTAATGACC
ACCGTCCCAGAAGACGATCAAATAATGTCCAATAACTCCGTACAACCCGC
CTGGCGTTCCAATTACAAAACCGACTCCACGGAGGCGATGACAGTGACCA
CTGTGGATTTGATCAGTTGGGCATTCCAAGTGGCAAGGGGCATGGATTAC
TTGTCCTCCAAGAAGGTGTTGCACGGCGATCTGGCCGCTAGAAATATTCT
CCTCTGCGAGGACAATGTGGTAAAGATTTGTGACTTTGGTCTGGCTCGAT
CCATGTATCGAGGTGATAACTACAAGAAGTCAGAGAATGGCAAATTGCCC
ATCAAGTGGCTGGCGCTGGAATCGCTGAGCGATCATGTGTTCAGCACATA
CAGCGATGTTTGGTCCTACGGAATTGTTCTATGGGAGATGTTCTCGCTGG
CCAAGGTGCCGTATCCGGGCATCGATCCCAACCAAGAGCTATTTAACAAA
CTGAACGATGGCTACCGCATGGAGAAGCCGAAATTTGCCAACCAGGAGCT
CTACGAGATTATGCTAGAGTGCTGGCGAAAGAATCCCGAGAGCAGACCTT
TGTTTGCTGAGCTGGAGAAGCGATTTGCAAACATGCTGGGCGAGGATGTA
GCCAGCCACTACCTGGACCTAAACAATCCGTACATGCAGAGCAACATTGA
GTACATGAAGAAGCAGTCTACGGATTACCTGGCACTGATGGGATCACCCG
ACGAGCTGGCGCCTGCAGCTCCGCGCTACGTGAACGGGCACATAGTGCCC
GATATACGCATCGAAGAGCTGCCGGATGACTACATGGAGATGAGCCGGGA
TTCTGATCCCGATGCCTGCACCGCCATATTCTCACCCACACGCCTCGAGG
GCGAGTCCTCAGACTTTCCGGATTTCTCTAGCGAAACCACTTTCAATTTC
CCAGGGGCGCGACAGTCGCCTACGCTGAGTAACAATCTCAACAGCGGATC
GAGTAAGCCGCTCCGCAAGAAGAACGGCATGCCAACTGTGGATGTGGCAG
ATCAGGCGCCGGAGGAGATACCTATGCTGCATCGCAGCTCCACTGGATCG
GATGGAAGTCCGGAACAGGGAAGGCGCTTCAATCAGGCCCTTAAGCAGCA
GTATGTCACGCCCACACCGTCCCCTCGCCATCATGTGGAGACCAAACTCA
ATGGGGAGCCATCCGAAAACTATGTGAATATGAAGCCACCCAGGAAGAAT
ATACCCGGCAAAACCACAACAGGTGGCGGGGGTGCTGCTGCTGGAGCCTC
CACGGAGGCCTTCTCGAATCCCAGCTACCAGCCACTGTCCACCGTCAACG
AGAAGGAGCAACGAAGGTATGCAAGCTTTCTAGACCAT
BO28790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvr-RG | 4407 | CG8222-PG | 1..4404 | 17..4420 | 22020 | 100 | Plus |
Pvr-RH | 4425 | CG8222-PH | 1..4422 | 17..4420 | 21805 | 99.6 | Plus |
Pvr-RE | 4512 | CG8222-PE | 1..2975 | 17..2991 | 14875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvr-RG | 5153 | CG8222-RG | 325..4728 | 17..4420 | 22020 | 100 | Plus |
Pvr-RH | 5788 | CG8222-RH | 942..5363 | 17..4420 | 21805 | 99.6 | Plus |
Pvr-RE | 5311 | CG8222-RE | 378..3352 | 17..2991 | 14875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8221552..8222114 | 4420..3858 | 2815 | 100 | Minus |
2L | 23513712 | 2L | 8228494..8229012 | 604..86 | 2595 | 100 | Minus |
2L | 23513712 | 2L | 8224051..8224533 | 2832..2350 | 2415 | 100 | Minus |
2L | 23513712 | 2L | 8225672..8226141 | 1564..1095 | 2350 | 100 | Minus |
2L | 23513712 | 2L | 8224593..8225042 | 2351..1902 | 2250 | 100 | Minus |
2L | 23513712 | 2L | 8225106..8225418 | 1901..1589 | 1565 | 100 | Minus |
2L | 23513712 | 2L | 8222892..8223163 | 3383..3112 | 1360 | 100 | Minus |
2L | 23513712 | 2L | 8222581..8222832 | 3633..3382 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 8226210..8226395 | 1094..909 | 930 | 100 | Minus |
2L | 23513712 | 2L | 8223825..8223984 | 2991..2832 | 800 | 100 | Minus |
2L | 23513712 | 2L | 8227670..8227826 | 761..605 | 785 | 100 | Minus |
2L | 23513712 | 2L | 8222225..8222376 | 3858..3707 | 760 | 100 | Minus |
2L | 23513712 | 2L | 8226458..8226607 | 910..761 | 750 | 100 | Minus |
2L | 23513712 | 2L | 8223223..8223345 | 3113..2991 | 615 | 100 | Minus |
2L | 23513712 | 2L | 8222446..8222518 | 3706..3634 | 365 | 100 | Minus |
2L | 23513712 | 2L | 8230125..8230194 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:07:56 has no hits.
BO28790.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:32 Download gff for
BO28790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvr-RE | 274..3247 | 17..2990 | 100 | -> | Plus |
Pvr-RE | 3354..4782 | 2991..4422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:41 Download gff for
BO28790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvr-RG | 325..4728 | 17..4422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:26 Download gff for
BO28790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvr-RG | 325..4728 | 17..4422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:26 Download gff for
BO28790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8223825..8223984 | 2832..2991 | 100 | <- | Minus |
2L | 8221550..8222114 | 3858..4422 | 99 | <- | Minus |
2L | 8222226..8222376 | 3707..3857 | 100 | <- | Minus |
2L | 8222446..8222518 | 3634..3706 | 100 | <- | Minus |
2L | 8222581..8222830 | 3384..3633 | 100 | <- | Minus |
2L | 8222892..8223161 | 3114..3383 | 100 | <- | Minus |
2L | 8223223..8223344 | 2992..3113 | 100 | <- | Minus |
2L | 8224052..8224531 | 2352..2831 | 100 | <- | Minus |
2L | 8224593..8225042 | 1902..2351 | 100 | <- | Minus |
2L | 8225106..8225415 | 1592..1901 | 100 | <- | Minus |
2L | 8225486..8225512 | 1565..1591 | 100 | <- | Minus |
2L | 8225672..8226141 | 1095..1564 | 100 | <- | Minus |
2L | 8226210..8226393 | 911..1094 | 100 | <- | Minus |
2L | 8226458..8226606 | 762..910 | 100 | <- | Minus |
2L | 8227670..8227826 | 605..761 | 100 | <- | Minus |
2L | 8228494..8229011 | 87..604 | 100 | <- | Minus |
2L | 8230125..8230194 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:41 Download gff for
BO28790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8221550..8222114 | 3858..4422 | 99 | <- | Minus |
arm_2L | 8222226..8222376 | 3707..3857 | 100 | <- | Minus |
arm_2L | 8222446..8222518 | 3634..3706 | 100 | <- | Minus |
arm_2L | 8222581..8222830 | 3384..3633 | 100 | <- | Minus |
arm_2L | 8222892..8223161 | 3114..3383 | 100 | <- | Minus |
arm_2L | 8223223..8223344 | 2992..3113 | 100 | <- | Minus |
arm_2L | 8223825..8223984 | 2832..2991 | 100 | <- | Minus |
arm_2L | 8224052..8224531 | 2352..2831 | 100 | <- | Minus |
arm_2L | 8224593..8225042 | 1902..2351 | 100 | <- | Minus |
arm_2L | 8225106..8225415 | 1592..1901 | 100 | <- | Minus |
arm_2L | 8225486..8225512 | 1565..1591 | 100 | <- | Minus |
arm_2L | 8225672..8226141 | 1095..1564 | 100 | <- | Minus |
arm_2L | 8226210..8226393 | 911..1094 | 100 | <- | Minus |
arm_2L | 8226458..8226606 | 762..910 | 100 | <- | Minus |
arm_2L | 8227670..8227826 | 605..761 | 100 | <- | Minus |
arm_2L | 8228494..8229011 | 87..604 | 100 | <- | Minus |
arm_2L | 8230125..8230194 | 17..86 | 100 | | Minus |
BO28790.pep Sequence
Translation from 16 to 4438
> BO28790.pep
MAMLPRLILLPLLLILRISWSDAVPLQQFSPDPDDSIENCGGENGAPLMT
PCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFG
TSLHLIEVTADYVAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASSIY
VYVNDPDTKLVDSHNVVTARQYTDVVIPCKPAMPDTEVLLETSNGEMHSS
KSVGRYDPQRGFTIEIRSIVDGGDYYCRPNPPFPHNEEEMTSIEVRFIED
GKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYVESVYGMEWFTPSRDENR
IFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYKCVTTDNSNQNVQ
RATYRIKVLKQNESYLNVGEPSGHYNVQEYANRTIQMTANFEGFPTPSFS
WFKPDGTEVRQSENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSFGV
VQREYNVSVMDAPALKMSDAYVQVGSVARLECTVRSYPPAIVTFFFRPCS
LEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGKLSVERIYEVSFLPTEP
GILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDHKIAKEDNV
NFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHITTI
SDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIK
RKLSQTLELECASTAVPVAIVRWFKDDKEVTESKLRHIIEKESKLLITHL
YPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGVILFLILIG
LCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGHINPDLTLDEQAELLPY
NREFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKAT
ADNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRF
GNIQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNYELHRNSDNDPRS
GTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNY
KTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDN
VVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDVWS
YGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIML
ECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSNIEYMKKQ
STDYLALMGSPDELAPAAPRYVNGHIVPDIRIEELPDDYMEMSRDSDPDA
CTAIFSPTRLEGESSDFPDFSSETTFNFPGARQSPTLSNNLNSGSSKPLR
KKNGMPTVDVADQAPEEIPMLHRSSTGSDGSPEQGRRFNQALKQQYVTPT
PSPRHHVETKLNGEPSENYVNMKPPRKNIPGKTTTGGGGAAAGASTEAFS
NPSYQPLSTVNEKEQRRYASFLDH
BO28790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvr-PG | 1468 | CG8222-PG | 1..1468 | 1..1468 | 7741 | 100 | Plus |
Pvr-PH | 1474 | CG8222-PH | 1..1474 | 1..1468 | 7720 | 99.5 | Plus |
Pvr-PE | 1503 | CG8222-PE | 1..1503 | 1..1468 | 7695 | 97.7 | Plus |
Pvr-PL | 1509 | CG8222-PL | 1..1509 | 1..1468 | 7674 | 97.2 | Plus |
Pvr-PD | 1509 | CG8222-PD | 1..1509 | 1..1468 | 7674 | 97.2 | Plus |