Clone BO28791 Report

Search the DGRC for BO28791

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:287
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG8646-RB
Protein status:BO28791.pep: Imported from assembly
Sequenced Size:1720

Clone Sequence Records

BO28791.complete Sequence

1720 bp assembled on 2011-10-14

GenBank Submission: KX794518

> BO28791.complete
GAAGTTATCAGTCGACATGTGGTTTTTATGGCTGATCTGCTTGCTGCTGC
CAATCATTGATGCAGCTGAGGTTGAAAAATCTCCTGCAAAGCCCAACATT
ATATTTATTTTGGCGGATGATTTGGGCTTCAACGATGTGGGATTCCATGG
CTCGGCAGAGATTCCCACGCCTAACATTGATGCCTTGGCCTATTCTGGCA
TTATTCTGAATCGTTACTATGTGGCACCCATTTGTACTCCATCCAGATCT
GCCCTTATGACGGGAAAATATCCCATACACACAGGAATGCAACATACAGT
TCTCTATGCCGCTGAACCACGAGGTTTGCCCTTGGAGGAGAAAATACTAC
CTCAATATTTGAATGAGTTGGGCTACACCTCTCACATAGCTGGCAAGTGG
CATTTAGGCCATTGGAAGCTGAAGTACACTCCGTTGTATCGCGGCTTCAG
TAGCCACGTGGGATTCTGGTCGGGTCACCAGGATTACAACGATCACACCG
CCGTGGAGAACAACCAGTGGGGTCTAGACATGCGCAATGGAACACAAGTG
GCCTATGACTTGCATGGTCACTACACCACGGATGTGATAACCGATCACTC
GGTTAAGGTCATTGCCAACCATAATGCCACCAAGGGTCCACTGTTTCTCT
ACGTAGCCCATGCGGCTTGTCACTCGAGTAATCCGTATAATCCTCTGCCG
GTTCCGGACAACGATGTGATCAAGATGTCGCACATTCCCAACTATAAACG
GCGAAAATTTGCTGCTATGGTTTCCAAAATGGACAACTCTGTGGGTCAAA
TTGTGGATCAGCTGCGCAAGTCGAACATGCTGGAGAACTCGATCATCATA
TTCTCCTCGGATAACGGGGGACCAGCCCAAGGATTCAACCTTAACTTCGC
CTCCAACTATCCCCTGAAGGGTGTGAAGAATACCCTGTGGGAGGGCGGAG
TTAGAGCAGCGGGTCTCATGTGGTCACCTCTGCTGAAGAAAAGCCAACGA
GTGTCCAACCAGACCATGCACATCATTGACTGGTTGCCCACGCTCCTGGA
GGCAGCTGGTGGTCAACCAGCGTTGTCTAATCTCAGCAAGCAAATCGATG
GCCAGAGCATTTGGCGGGCACTGGTTCAGGACAAGGCATCTCCTCGCTTG
AATGTACTGCACAATATCGATGATATATGGGGCAGTGCAGCGCTCAGCGT
TGGAGATTGGAAGCTGGTCAAGGGCACCAATTACCGGGGTAGTTGGGATG
GTTGGTACGGTCCGGCTGGGGAAAGAGATCCTCGTCTGTACGACTGGCAG
TTGGTGGGCAGGAGTAGGGCGGGCAAAGCGCTGGAGGCTCTCAAGATGCT
GCCAAGTCGGGCGGATCAGCAGAGAATACGAGCAGCTGCCACGGTGTCGT
GCCCGGGACAATCCTCCCAAGGAACCAGTTGTGTGGCCACCGCATTCTCT
GCTCCGTGCTTGTTCCACATTCGCGATGATCCCTGTGAGCAGTACAATCT
GGCCAAGCAATATCCGGAAGTGGTAAACGCATTGATGACAGAACTCGAGC
GATTCAATGCCACCGCAGTGCCGCCCTCGAATAAACCAGCTGATCCTCGA
GCTGATCCCAGATTCTGGAACTATACGTGGACAAACTTTGGGGACTATCA
AAATAACGATCTTGATACTTTTAGTGGGGATATTACTTTGGCAAAGACTG
TGGCAAGCTTTCTAGACCAT

BO28791.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8646-RB 1689 CG8646-PB 1..1686 17..1702 8430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8646-RB 1763 CG8646-RB 53..1738 17..1702 8430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12658313..12659065 757..1509 3735 99.7 Plus
2R 25286936 2R 12657815..12658207 372..764 1965 100 Plus
2R 25286936 2R 12659124..12659316 1510..1702 965 100 Plus
2R 25286936 2R 12657458..12657619 124..285 810 100 Plus
2R 25286936 2R 12657284..12657392 17..125 545 100 Plus
2R 25286936 2R 12657673..12657762 283..372 450 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:55:19 has no hits.

BO28791.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:34 Download gff for BO28791.complete
Subject Subject Range Query Range Percent Splice Strand
CG8646-RB 51..1736 17..1704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:51 Download gff for BO28791.complete
Subject Subject Range Query Range Percent Splice Strand
CG8646-RB 53..1738 17..1704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:55 Download gff for BO28791.complete
Subject Subject Range Query Range Percent Splice Strand
CG8646-RB 53..1738 17..1704 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:55 Download gff for BO28791.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12657284..12657391 17..124 100 -> Plus
2R 12657675..12657762 285..372 100 -> Plus
2R 12657459..12657618 125..284 100 -> Plus
2R 12657816..12658207 373..764 100 -> Plus
2R 12658321..12659065 765..1509 100 -> Plus
2R 12659124..12659316 1510..1704 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:51 Download gff for BO28791.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8545321..8545712 373..764 100 -> Plus
arm_2R 8546629..8546821 1510..1704 98   Plus
arm_2R 8544789..8544896 17..124 100 -> Plus
arm_2R 8544964..8545123 125..284 100 -> Plus
arm_2R 8545180..8545267 285..372 100 -> Plus
arm_2R 8545826..8546570 765..1509 100 -> Plus

BO28791.pep Sequence

Translation from 16 to 1720

> BO28791.pep
MWFLWLICLLLPIIDAAEVEKSPAKPNIIFILADDLGFNDVGFHGSAEIP
TPNIDALAYSGIILNRYYVAPICTPSRSALMTGKYPIHTGMQHTVLYAAE
PRGLPLEEKILPQYLNELGYTSHIAGKWHLGHWKLKYTPLYRGFSSHVGF
WSGHQDYNDHTAVENNQWGLDMRNGTQVAYDLHGHYTTDVITDHSVKVIA
NHNATKGPLFLYVAHAACHSSNPYNPLPVPDNDVIKMSHIPNYKRRKFAA
MVSKMDNSVGQIVDQLRKSNMLENSIIIFSSDNGGPAQGFNLNFASNYPL
KGVKNTLWEGGVRAAGLMWSPLLKKSQRVSNQTMHIIDWLPTLLEAAGGQ
PALSNLSKQIDGQSIWRALVQDKASPRLNVLHNIDDIWGSAALSVGDWKL
VKGTNYRGSWDGWYGPAGERDPRLYDWQLVGRSRAGKALEALKMLPSRAD
QQRIRAAATVSCPGQSSQGTSCVATAFSAPCLFHIRDDPCEQYNLAKQYP
EVVNALMTELERFNATAVPPSNKPADPRADPRFWNYTWTNFGDYQNNDLD
TFSGDITLAKTVASFLDH

BO28791.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8646-PB 562 CG8646-PB 1..562 1..562 3040 100 Plus
CG7402-PA 579 CG7402-PA 27..566 25..559 1107 42 Plus
CG7408-PD 585 CG7408-PD 34..556 25..543 1056 41.8 Plus
CG7408-PC 585 CG7408-PC 34..556 25..543 1056 41.8 Plus
CG7408-PB 585 CG7408-PB 34..556 25..543 1056 41.8 Plus