BO28793.complete Sequence
4312 bp assembled on 2011-10-14
GenBank Submission: KX794253
> BO28793.complete
GAAGTTATCAGTCGACATGCTTCCGTCGGACGTGTGCCGCACCTGTGCGG
TGCAGAACAGCCAATTGCTGCCCTTGTCCACTTGCCTGGACAAAGACTCC
TCCAAAAGCTACTATGCGGTGCTCCAGGAATTGACGCAAATCGATCTGGA
AAACACCGATGACAACCTGCCGCAACATATATGCAGCGAGTGCTGGAGAC
GAATGGAAAGTGCCTATACCTTTGTGCAACAGGCCAGAAAAGTCCATGGA
GAGCTGCTGGCTCAGTTGAGGGAATGTCTAGACGAATTGCCCATCGATAT
TCCTGCGGAACAGAACATAAAAACGGAAGTAGACCTCGATGATGGCGGTA
ACAAGTCCGAAGTGGAAGTGGACGACACCGAAGCGACGGCTTTGGAACTT
AAGTGGCAGCCGGCGAGTGGCAGCGATCGGGAATTTTGTTCTGGTCCGGA
AAGCGATGAAGATCAAGTGGAAAAGAAGTCGTATCATCTACGTCGAAGCT
CTCGAAAAGTAAAGCATCCAGTGGAAAGCGAAAACGAGGAATGTAAGCCA
TCTGAACCATCGCCGGTTAAGCGCCGTCGAGGACGCCCACCTGGTCCAGC
GAAAAGCCAGGCGATGACCACGGATGGCCGGCACGCATGTGAGGTTTGCG
GAAAGACATTCTCCTGGTACCGCGACATGCAGCGCCACGCCAGGATCCAC
TTCGAGAACGCTTCATACGTGTGCGACACCTGTGGCAAGGGATTCCTGCG
CAAGGACAAGTACATATTTCATCTCCGATGCCACAAGAAGCGAGAGGCCA
AATGGAAGGCTCTCCAGCTCGGGAAAGAGTGGCGTTTTGCTGAGCGCCTC
TATAGCTCAGGAAAGTTAAAAAGAATCGAGTGCAAGCTATGCGGGTTGAG
CTGCCAGCGAATGGAGGAGCTTAGAGCTCACCTATGGGATCACGCAGATA
CGGAGACCTTAGTCAACTTGAGAACGGATAGTGACGTGGTAAGAGAGCAT
TTTCCTGGCTTGCCATGTGACTTGGACAATATAAAGAAACAGATCTGCGT
TGACATAGCAGATGGCCATTTGGAGAAGTATGCCTGTGTAGTGAATTTCC
ACGGATACGAGCTGGGACTCAGCGATTCCGACGAAGAGTGTGACAGCAAA
GAGTCTAAATATCATTGCTTCGTGTGCAATATGTCTTTTAATCGCAAACA
TCGCCTGATGAAACACACCCTAGAGGACCACTCCCAATCTGCTACAACGC
TGCCTTGGCAACGCTGCAGTTCCTGTAAAGTTGGTTTCCTGTGCCTAACG
ATGTACAACAAACATCTGAACACGCATTGCCAGAGCAAAATCCGAAGATA
TCGCTGCCGTAAATGTTCCGGGAGGTTTATGTGGCCGGAAAACCTCCAAA
GACACGCGTGCTCGCACCGCGAGGAGAAAACGATTGCCAGCCAAATATTG
TGCTCCCTGTGCGATATTTCGCTATCTAGCTTATCGCAACTTCGCCTTCA
CTTAATAACCCACCAACATGATTTGAATGGCATTAGCCCGGAGTACAATT
CCTTGTTCTTTCGGTCGTTTTATCCTGACGGATTGAATTGCAGTATCTCA
GATCTTGCTGTTCGTATAGCTGAGGATTTTGAGGTTCAGGACTTCGATCG
CTACTATAACGCCAGTACCGAAAGTGGGCAGGAGCTCGATCTTTTTGAAT
CCGAAACAGAGTTGAGCGACGAGGAGACATCTAAAACATCGCACATCTGT
CTTTTATGTGGAGAAACTTCGAATTCACTGATGAACCTGATGAAGCACCA
AATATGCTTACATTCTGATGGGGTGGCTGAGCTTCCCTGTCGCTGCGACT
ACTGTGGATCTGGCTTCGTAAGCAAAGCCCTTCTTCAACAACATCGTAGG
CACCGTTGCGAAAAGAAACACTCCCGATTTCACTGCCGAATATGTAATAT
CCGGTTCATATGGGAATCGAACTATGAGAAACACGAGAAGACTCACCACA
ACAAAACGAAAGACGCAGAGGAACGACCTACAAAATTGAAGTGCGACCAG
TGCGAAAAGGTATTCATCTGGCACAAGGATCTCAATCGTCACAAACGCCT
GCATCAACCTCAGTCTGCTGCCCAGTTCGACTGTCCCCATTGCCATCGTA
GGTTCCACCGCAAGGATGGCCTAAAGTCCCACCTTAAAGTACACGCTGGA
AATTCAGACTACATAAATAATCAGCCTGTCGTACCTGACGTTAACCAGGA
AATGATTCTGGCCCGGCTAAGTCGTCCTCATGGTTGCAAGCTGATTCAGT
GCATGATCTGCCTCTCACGCCACTCAAAGATCAGTGATCTAAGGTCTCAT
TTGAGTTCTCATCAATACGAACTGAGTTTCGCCGAAGACAGAGATATTCC
GAGTGCTTCAAAAGCTTTTTACCCAGATCTGGAAAATACTCTAGAAAAAG
ATGAACTGGCCGAAATGATTATGGCTGATGTGCAAAGGGAATTCGACTTA
GACCGCTTTATTTCTATCACAAACGAGGCCGGCCTGGAGCTGAATCTGGA
AAGCAGCGAAACTGATACTGAGTCCGAGCAAGAGGATAATCACTCATCTC
TAAACTATCCATGCAACCTCTGTACGACGGTTGTGAAGAGGAAACATCAG
CTGTATGCCCACCAACTGGAGGAGCACAAGTGGGAGGAGGCAGTCCTCGT
ATGTTCCAACTGCCAGACACGATTTGTTAATGAATCTTTGCTCGATCACC
ACTCCAGAACCCTTTGCCACAATCCGCAAAAACTCTTTCAGTGCCGAAAG
TGTCCGCTTCGTTTCCGCTGGCGGGAGAATCTGAAGCTCCATATGGAAGT
ATTCCATATGCTAGATGAACTTTCAATACAGGATGATTTACCTAAAGTAG
ATGGCGATCTGCAGTGCGGAAAGTGTAATCGCAGTTTTAGGATGCAAAAG
GATCTCACGCGCCATACACTAATGCACGGTCAGGAATCAAATATCTTCCG
ATGCCGTTGGTGTGCACGTCGCTTTTATCGTAGGGCCAATCTTTTACAGC
ACATCGCTCGTCACGGGATAAGTGTTAGCCAGTTGCCTTATGCTGAGGCC
ATACTGGACTCATATGTGAATCCTGGAGGCCGAAAAAAGGTGGAATGCCG
AGTGTGCAACGTGAGCTTTCCTACTATCGCCGCTTTGCGACTTCATCTGG
AAACTATGCCCGCCGGTAGTCACCACGACTACTCCTCACTTCAAAACTAC
TCGATTACTAACCAAATGGGTTTCGAGATGGATTTGTATGATTCCGAGAC
TGATGATGAAGACTCTAGGACACACATAAAACCACCAGGAGCGCCTTCCT
CTTATACGTGCAATATGTGCCAACTAAGATGTTTACGGAAATTCGAGCTA
TATCAGCACCAGCAGGCTATGCACCGGATGGAGAAGATCTCCGACGGCTG
TGATAGTTGCCTATTCAAGAGCGTCTGCCCGGAAATTATATCGCACCACA
AAAGAACTCAGTGCGAAAACCGAGAAAAGCAGTTCAAATGCACACGCTGC
GGATACAAGTTCATGTGGGAGTCAAACCTTTTGCTACACATGGATTTGCA
ACATGTGAAAACAGAAGATCAGGAGCTAGATGAGTCAAAGGAAGCGTCAG
GTGACGAGCCAAAAACCGAAGGCCAGGTCTTTCAGTGTGGACTTTGTACA
AGGAAATACAATCGGAAAGATCGGCTGACGGCACACTTAAAAAAGTTCCA
TGGGCCCGACTGCAAACCGAGTACAGCGAAGACTCCGAATAGACCTATAT
CCCCTAAGGAACCAAAGCGGTTCCTATGTGCTTTCTGCGGCAAGGCGGTC
AGTTCTTCCTCCAACTTAATCATCCACATGCGACGTCATACCGGTGAGAA
ACCTTTCAAGTGCGAGTACTGCACTATGGCCTTCCCACGATCCTCTGATC
TCCAGTGCCACCGACGTACGCATACCGGCGAACGTCCACATGTATGCACA
GTGTGCCAGAAGGGATTCGCCCGTTCGTATAAACTGCAGCAGCACATGCG
AATTCACAGCGGAGAACGGCCCTACAAGTGCACCTACTGCGAGAAGAGCT
TCACGCAATCCAACGACCTCACCCTGCACATCCGGCGGCACACTGGCGAG
CGTCCCTACCAATGTGGCGTCTGTGGAGAGCGCTTTATCCAGGGCACTGC
TTTAAAGAACCATCGCATGCAGCAGAGCCACTATGAGGAGGGACAGGAAT
CAGTTGAGCCCACCAGGCGCACGGTTCTAGAGCAGTTTACTCTAGCAAGC
TTTCTAGACCAT
BO28793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11902-RB | 4281 | CG11902-PB | 1..4278 | 17..4294 | 21375 | 100 | Plus |
| CG2202-RA | 2670 | CG2202-PA | 2098..2207 | 4043..4152 | 190 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11902-RB | 4601 | CG11902-RB | 144..4421 | 17..4294 | 21375 | 100 | Plus |
| CG2202-RA | 3363 | CG2202-RA | 2236..2345 | 4043..4152 | 190 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25337672..25339908 | 2058..4294 | 11170 | 100 | Plus |
| 3R | 32079331 | 3R | 25336103..25337624 | 541..2062 | 7610 | 100 | Plus |
| 3R | 32079331 | 3R | 25335603..25335916 | 146..459 | 1570 | 100 | Plus |
| 3R | 32079331 | 3R | 25335400..25335528 | 17..145 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 25335971..25336051 | 460..540 | 405 | 100 | Plus |
| X | 23542271 | X | 10851137..10851246 | 4043..4152 | 190 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:42:06 has no hits.
BO28793.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:08 Download gff for
BO28793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11902-RB | 90..4367 | 17..4296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:08 Download gff for
BO28793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11902-RB | 144..4421 | 17..4296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:58 Download gff for
BO28793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11902-RB | 144..4421 | 17..4296 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:58 Download gff for
BO28793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25335400..25335528 | 17..145 | 100 | -> | Plus |
| 3R | 25335603..25335916 | 146..459 | 100 | -> | Plus |
| 3R | 25335971..25336051 | 460..540 | 100 | -> | Plus |
| 3R | 25336103..25337621 | 541..2059 | 100 | -> | Plus |
| 3R | 25337674..25339908 | 2060..4296 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:08 Download gff for
BO28793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21161122..21161250 | 17..145 | 100 | -> | Plus |
| arm_3R | 21161325..21161638 | 146..459 | 100 | -> | Plus |
| arm_3R | 21161693..21161773 | 460..540 | 100 | -> | Plus |
| arm_3R | 21161825..21163343 | 541..2059 | 100 | -> | Plus |
| arm_3R | 21163396..21165630 | 2060..4296 | 99 | | Plus |
BO28793.pep Sequence
Translation from 16 to 4312
> BO28793.pep
MLPSDVCRTCAVQNSQLLPLSTCLDKDSSKSYYAVLQELTQIDLENTDDN
LPQHICSECWRRMESAYTFVQQARKVHGELLAQLRECLDELPIDIPAEQN
IKTEVDLDDGGNKSEVEVDDTEATALELKWQPASGSDREFCSGPESDEDQ
VEKKSYHLRRSSRKVKHPVESENEECKPSEPSPVKRRRGRPPGPAKSQAM
TTDGRHACEVCGKTFSWYRDMQRHARIHFENASYVCDTCGKGFLRKDKYI
FHLRCHKKREAKWKALQLGKEWRFAERLYSSGKLKRIECKLCGLSCQRME
ELRAHLWDHADTETLVNLRTDSDVVREHFPGLPCDLDNIKKQICVDIADG
HLEKYACVVNFHGYELGLSDSDEECDSKESKYHCFVCNMSFNRKHRLMKH
TLEDHSQSATTLPWQRCSSCKVGFLCLTMYNKHLNTHCQSKIRRYRCRKC
SGRFMWPENLQRHACSHREEKTIASQILCSLCDISLSSLSQLRLHLITHQ
HDLNGISPEYNSLFFRSFYPDGLNCSISDLAVRIAEDFEVQDFDRYYNAS
TESGQELDLFESETELSDEETSKTSHICLLCGETSNSLMNLMKHQICLHS
DGVAELPCRCDYCGSGFVSKALLQQHRRHRCEKKHSRFHCRICNIRFIWE
SNYEKHEKTHHNKTKDAEERPTKLKCDQCEKVFIWHKDLNRHKRLHQPQS
AAQFDCPHCHRRFHRKDGLKSHLKVHAGNSDYINNQPVVPDVNQEMILAR
LSRPHGCKLIQCMICLSRHSKISDLRSHLSSHQYELSFAEDRDIPSASKA
FYPDLENTLEKDELAEMIMADVQREFDLDRFISITNEAGLELNLESSETD
TESEQEDNHSSLNYPCNLCTTVVKRKHQLYAHQLEEHKWEEAVLVCSNCQ
TRFVNESLLDHHSRTLCHNPQKLFQCRKCPLRFRWRENLKLHMEVFHMLD
ELSIQDDLPKVDGDLQCGKCNRSFRMQKDLTRHTLMHGQESNIFRCRWCA
RRFYRRANLLQHIARHGISVSQLPYAEAILDSYVNPGGRKKVECRVCNVS
FPTIAALRLHLETMPAGSHHDYSSLQNYSITNQMGFEMDLYDSETDDEDS
RTHIKPPGAPSSYTCNMCQLRCLRKFELYQHQQAMHRMEKISDGCDSCLF
KSVCPEIISHHKRTQCENREKQFKCTRCGYKFMWESNLLLHMDLQHVKTE
DQELDESKEASGDEPKTEGQVFQCGLCTRKYNRKDRLTAHLKKFHGPDCK
PSTAKTPNRPISPKEPKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCE
YCTMAFPRSSDLQCHRRTHTGERPHVCTVCQKGFARSYKLQQHMRIHSGE
RPYKCTYCEKSFTQSNDLTLHIRRHTGERPYQCGVCGERFIQGTALKNHR
MQQSHYEEGQESVEPTRRTVLEQFTLASFLDH
BO28793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11902-PB | 1426 | CG11902-PB | 1..1426 | 1..1426 | 7818 | 100 | Plus |
| CG18476-PA | 936 | CG18476-PA | 200..927 | 670..1408 | 1591 | 41.5 | Plus |
| CG10669-PB | 933 | CG10669-PB | 207..930 | 569..1348 | 1072 | 32.8 | Plus |
| CG10669-PA | 933 | CG10669-PA | 207..930 | 569..1348 | 1072 | 32.8 | Plus |
| CG18476-PA | 936 | CG18476-PA | 205..928 | 416..1141 | 608 | 25.5 | Plus |
| CG18476-PA | 936 | CG18476-PA | 6..900 | 6..788 | 598 | 24.8 | Plus |
| CG10669-PB | 933 | CG10669-PB | 5..897 | 7..1060 | 560 | 23 | Plus |
| CG10669-PA | 933 | CG10669-PA | 5..897 | 7..1060 | 560 | 23 | Plus |
| CG3281-PA | 538 | CG3281-PA | 203..429 | 1173..1405 | 519 | 44 | Plus |
| CG10669-PB | 933 | CG10669-PB | 300..921 | 230..799 | 396 | 24.7 | Plus |
| CG10669-PA | 933 | CG10669-PA | 300..921 | 230..799 | 396 | 24.7 | Plus |
| CG10669-PB | 933 | CG10669-PB | 178..812 | 866..1418 | 313 | 22.3 | Plus |
| CG10669-PA | 933 | CG10669-PA | 178..812 | 866..1418 | 313 | 22.3 | Plus |
| CG10669-PB | 933 | CG10669-PB | 576..925 | 1112..1399 | 270 | 23.7 | Plus |
| CG10669-PA | 933 | CG10669-PA | 576..925 | 1112..1399 | 270 | 23.7 | Plus |
