BO28794.complete Sequence
934 bp assembled on 2011-08-24
> BO28794.complete
GAAGTTATCAGTCGACATGATGCGAAATGCCTTGTTAGTAAGCGGCAAAC
TGAGACATTTGCTATCCTGTTCTATCGGGCGAAATTCGACTAGAAGCAGC
AGCACAGCGAAGTCGTTGGATGCCGGCACCCAAAAGGAAGTGCGGCACCA
TGAGAATCACGCCTCGGAGTGGTGGAATCAAAATGGAACCATGGGTGCTC
TACATGCCCTGAATGAGATTAGGGTTCCCTTTATCAGAGATGGCATCGTT
TCGCGTGGCACTGTGAAGCCAGGTTACGTAAATACCACCAAAGTGTTGTT
GGGTCAAAATATTCTGGAGGTCGGATGTGGCGGAGGATTGCTTACGGAAC
ACTTGGCGCGCCTGGGTGCCCAGGTGGCTGGCATAGATCTTGGCGAGAAG
TTAATAGAAGCTGCTCGCGAGCATCTCAAATGCTCCAGTCCGGAGTTGGC
CAGCAATGTGGTGTACAAAATTGAGCCGGTGGATCAGCATGCCAAGGCCA
ATTGCGAATGCTATGATGCGGTGATAGTGTCTGAAGTTCTGGAGCACGTC
AAAGATAAAGTGTCCCTGCTGGAGGCCAGTGTACGCAGCCTAAAGCCTGG
AGGATCCATCTTTATCACCACTTTGAACAAAACCATACCCAGTTGGTTCG
GTGGCGTGTTACTCAGCGAGTATGTTCTCAATCTGGTGCCCAGGGGAACG
CACCACTGGGACAAAATGATTTCGCCCTTGGACGTTCAGCGCATCTTGGA
TACGATGAACTGTCAGACGGTGTTGGTAAATGGAAGCACCTACGACTTTT
GGAGCAACACCTGGCGATGGATCAACAACAACCAGATGTGCTACGCCTTG
CAGGCGGTGAAACAAGCACAGCGCGAGTACAATGCAAGCTTTCTAGACCA
TTCAGTTTGGCGGCGGCGGAGCGGGCCGAGGGGG
BO28794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9249-RB | 870 | CG9249-PB | 1..867 | 17..883 | 4335 | 100 | Plus |
CG9249-RA | 933 | CG9249-PA | 1..739 | 17..755 | 3695 | 100 | Plus |
CG9249-RA | 933 | CG9249-PA | 803..930 | 756..883 | 640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9249-RB | 991 | CG9249-RB | 49..915 | 17..883 | 4335 | 100 | Plus |
CG9249-RA | 1065 | CG9249-RA | 49..787 | 17..755 | 3695 | 100 | Plus |
CG9249-RA | 1065 | CG9249-RA | 851..978 | 756..883 | 640 | 100 | Plus |
Mpp6-RA | 1335 | CG9250-RA | 1170..1297 | 883..756 | 640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21157711..21158245 | 755..221 | 2675 | 100 | Minus |
2L | 23513712 | 2L | 21158303..21158481 | 223..45 | 895 | 100 | Minus |
2L | 23513712 | 2L | 21157520..21157647 | 883..756 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:20:37 has no hits.
BO28794.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:18 Download gff for
BO28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9249-RB | 26..898 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:35 Download gff for
BO28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9249-RB | 49..921 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:41 Download gff for
BO28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9249-RB | 49..921 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:41 Download gff for
BO28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21157514..21157647 | 756..891 | 97 | <- | Minus |
2L | 21157711..21158243 | 223..755 | 100 | <- | Minus |
2L | 21158304..21158480 | 46..222 | 100 | <- | Minus |
2L | 21158535..21158563 | 17..45 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:35 Download gff for
BO28794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21157514..21157647 | 756..891 | 97 | <- | Minus |
arm_2L | 21157711..21158243 | 223..755 | 100 | <- | Minus |
arm_2L | 21158304..21158480 | 46..222 | 100 | <- | Minus |
arm_2L | 21158535..21158563 | 17..45 | 100 | | Minus |
BO28794.pep Sequence
Translation from 16 to 934
> BO28794.pep
MMRNALLVSGKLRHLLSCSIGRNSTRSSSTAKSLDAGTQKEVRHHENHAS
EWWNQNGTMGALHALNEIRVPFIRDGIVSRGTVKPGYVNTTKVLLGQNIL
EVGCGGGLLTEHLARLGAQVAGIDLGEKLIEAAREHLKCSSPELASNVVY
KIEPVDQHAKANCECYDAVIVSEVLEHVKDKVSLLEASVRSLKPGGSIFI
TTLNKTIPSWFGGVLLSEYVLNLVPRGTHHWDKMISPLDVQRILDTMNCQ
TVLVNGSTYDFWSNTWRWINNNQMCYALQAVKQAQREYNASFLDHSVWRR
RSGPRG
BO28794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9249-PB | 289 | CG9249-PB | 1..289 | 1..289 | 1519 | 100 | Plus |
CG9249-PA | 310 | CG9249-PA | 1..310 | 1..289 | 1483 | 92.9 | Plus |