BO28796.complete Sequence
1006 bp assembled on 2011-08-24
GenBank Submission: KX799706
> BO28796.complete
GAAGTTATCAGTCGACATGGCTGGAAGAGGTGGTTATGAACACGCTAGCG
GATTCGGTGGGGATCGGGCATCCAAGCAGTTGCCCACGGAACCGCCGTTC
ATCGCATTTGTCGGCAATTTGCCGCAAGGCCTTGTGCAGGGCGATGTGAT
CAAAATATTCCAGGACTTTGAGGTGAAGTACGTGCGGCTGGTGAAGGACC
GGGAAACGGATCAGTTCAAAGGCTTCTGCTACGTCGAATTCGAGACGCTG
GACAATCTGGAGCGGGCGCTAGAGTGCGATGGTCGGATCAAACTGGACGA
TCTGTCGGCGCCGCTAAGGATCGACATTGCCGATCGGAGAAAAAATGATC
GCCCTGGTGGCGGTGTTGGCGGCGGCAACGGCGGCATGACCCGCGGCGAC
GGCGGCAGAGACGGTTTCCAGAAGCGCGGCCCACCTCGCCAGGGCGGCAG
CAGTCAGTCCTACAGCCGGGGAGGTCCTGGCACTGGCGGCGGCGGTCGGG
AGGGCGGCGGCGGTTCGGGTAATCGCGGCGATAGTAGAGATCGGCCGGCA
AATCGTGGTCGGTACGGCAGTTTCAATAACGACGATCGACCATTCGAGCG
TAACCAGGATCGGGATCGCGGTCAGCGGGAAGGCAGCTATGGCAACCAGT
CGCGCGACGGCGATCGCTACAACAACTTCAACCGGCACCGCGACCGCGAG
CGCACCCACTACAATCCCAACCAGCAGAGCGAACGTCCCAGTGGCGGCAT
GACCGGCCTTGGCGGCGGCTCCGGCGGATCAGGAGGCCTAGGCGTTGGCG
GTGGTTCCTCAATGGGCGCCATTGACGACAATGAGCGGCCACGTCTGCAG
CTGAAGCCACGGACCATTGCCGCGCCCATTAACGCGGTGGCAGAGACCAA
GCAATCGGCCTCGATCTTTGGCAACGCCAAGCCGCGCGAAGAGAAGCTGA
AGGAGCTGCAGCAGAATGTCAATCACAACGGCGATAACGCAAGCTTTCTA
GACCAT
BO28796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp2-RB | 975 | CG4429-PB | 1..972 | 17..988 | 4860 | 100 | Plus |
| Rbp2-RA | 978 | CG4429-PA | 1..975 | 17..988 | 4795 | 99.7 | Plus |
| Rbp2-RE | 954 | CG4429-PE | 12..951 | 49..988 | 4700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp2-RB | 3895 | CG4429-RB | 32..1005 | 15..988 | 4870 | 100 | Plus |
| Rbp2-RA | 3898 | CG4429-RA | 32..1008 | 15..988 | 4805 | 99.7 | Plus |
| Rbp2-RE | 2816 | CG4429-RE | 344..1283 | 49..988 | 4700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16449875..16450179 | 47..351 | 1525 | 100 | Plus |
| X | 23542271 | X | 16451273..16451559 | 538..824 | 1435 | 100 | Plus |
| X | 23542271 | X | 16450313..16450501 | 351..539 | 945 | 100 | Plus |
| X | 23542271 | X | 16451918..16452082 | 824..988 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 30726475..30726649 | 77..251 | 350 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:34:49 has no hits.
BO28796.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:19 Download gff for
BO28796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RB | 22..993 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:14 Download gff for
BO28796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RB | 34..1005 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:45 Download gff for
BO28796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RB | 34..1005 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:45 Download gff for
BO28796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16448698..16448729 | 17..48 | 100 | -> | Plus |
| X | 16449877..16450179 | 49..351 | 100 | -> | Plus |
| X | 16450314..16450501 | 352..539 | 100 | -> | Plus |
| X | 16451275..16451559 | 540..824 | 100 | -> | Plus |
| X | 16451919..16452082 | 825..990 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:14 Download gff for
BO28796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16342731..16342762 | 17..48 | 100 | -> | Plus |
| arm_X | 16343910..16344212 | 49..351 | 100 | -> | Plus |
| arm_X | 16344347..16344534 | 352..539 | 100 | -> | Plus |
| arm_X | 16345308..16345592 | 540..824 | 100 | -> | Plus |
| arm_X | 16345952..16346115 | 825..990 | 98 | | Plus |
BO28796.pep Sequence
Translation from 16 to 1006
> BO28796.pep
MAGRGGYEHASGFGGDRASKQLPTEPPFIAFVGNLPQGLVQGDVIKIFQD
FEVKYVRLVKDRETDQFKGFCYVEFETLDNLERALECDGRIKLDDLSAPL
RIDIADRRKNDRPGGGVGGGNGGMTRGDGGRDGFQKRGPPRQGGSSQSYS
RGGPGTGGGGREGGGGSGNRGDSRDRPANRGRYGSFNNDDRPFERNQDRD
RGQREGSYGNQSRDGDRYNNFNRHRDRERTHYNPNQQSERPSGGMTGLGG
GSGGSGGLGVGGGSSMGAIDDNERPRLQLKPRTIAAPINAVAETKQSASI
FGNAKPREEKLKELQQNVNHNGDNASFLDH
BO28796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp2-PB | 324 | CG4429-PB | 1..324 | 1..324 | 1741 | 100 | Plus |
| Rbp2-PA | 325 | CG4429-PA | 1..325 | 1..324 | 1729 | 99.7 | Plus |
| Rbp2-PC | 358 | CG4429-PC | 1..358 | 1..324 | 1685 | 90.5 | Plus |
| Rbp2-PE | 317 | CG4429-PE | 5..317 | 12..324 | 1681 | 100 | Plus |
| Rbp2-PD | 388 | CG4429-PD | 1..388 | 1..324 | 1644 | 83.5 | Plus |
