BO28805.complete Sequence
2245 bp assembled on 2011-09-19
GenBank Submission: KX795369
> BO28805.complete
GAAGTTATCAGTCGACATGGGCGATCGTAGTTGGAACCTGCTGCAGTATG
CCACCGAGAAGGCGCCAATACCACTGGACGGCTACACCGCCGAGGAGGCG
GCCGAGTTCAAGGACAGCATCAGGCAGAAGATCGTAGACGATCTGAAGTC
CATGACGGGCGAGGAGCTGATAGAGCTGGTCAAGCAGAATGCTGCCAAGG
TGGAGGAGGAGAAGGTGGAGATTCCGCCCACGGAACCCCTATCCGGCACC
GAGGAGGGCAAGGAACGAGTGCAGGATGATGCGGATCTCATAGATGCCGG
TATCATAGCCGAAATGGTCGCTGGACTGTGCACCAAAAGCCAGAAGGAGA
CGTTCATCAAGGTGATAACGAAGTATATCAGCAGTCAGAGACGCCACTAT
TCGATGCGGCCCCATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCT
ATTCGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGT
TCCTGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTG
CGAGAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGA
GACGGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGG
CTGTGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAG
TTCGTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTA
CAATCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGC
AGCTGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTGCACGATT
GATGGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCACACTCCA
GAGTTGCAGTAAGCCGCTGACCTACGCCATTGCCCTGGAGAAACTGGGTC
CCAAGGTCGTGCACTCTTATGTGGGCCAGGAGCCGAGTGGCAGGAACTTC
AACGAACTTGTTCTGGATCAGAACAAAAAGCCACACAATCCGATGATCAA
CGCTGGTGCCATTCTGACGTGCTCCCTGATGAACGCCCTTGTCAAGCCGG
ACATGACCTCCGCTGAGATCTTCGACTACACCATGTCTTGGTTCAAACGG
CTGTCGGGCGGAGAGTATATCGGCTTTAATAATGCCGTATTCCTGTCCGA
ACGCGAGGCTGCCGATCGGAACTATGCCCTGGGCTTCTACATGCGGGAGA
ACAAGTGCTTCCCCAAGCGCACCAATCTCAAGGAGGTGATGGACTTTTAC
TTCCAGTGCTGCTCCATGGAGACCAACTGCGAGGCAATGTCCGTAATCGC
GGCCAGTTTGGCCAATGGTGGCATCTGCCCCACCACCGAGGAGAAGGTGT
TCCGGCCGGAGGTAATCCGGGATGTGCTCTCGATTATGCACTCATGCGGT
ACATACGACTATTCCGGACAGTTCGCCTTCAAGGTGGGTCTGCCAGCCAA
GTCTGGAGTGAGTGGCGGCATGATGCTGGTCATCCCCAACGTAATGGGCA
TCTTTGCCTGGTCTCCGCCCTTGGATCACTTAGGCAATACAGTGAGAGGA
CTACAGTTTTGTGAGGAGCTGGTCTCCATGTTCAATTTCCATCGCTACGA
CAACCTGAAGCATCTGTCCAACAAGAAGGATCCGCGGAAGCACCGCTACG
AGACCAAGGGTCTGTCCATCGTGAATCTACTCTTTTCAGCTGCCAGCGGC
GATGTTACAGCCTTGCGGCGTCATCGTCTCTCCGGAATGGATATCACTCT
GGCCGACTACGATGGTCGCACTGCCCTCCATTTGGCTGCGTCCGAAGGAC
ACTTGGAGTGCGTCAAGTTCCTGCTGGAACAGTGTCATGTACCACACAAC
CCCAAGGATCGCTGGGGAAATCTGCCCGTGGATGAGGCAGAGAACTTCGG
CCACTGTCACGTGGTGGAGTTCCTTCGCTCCTGGGCGGAGAAGGCCGACC
AGTCCAGCGAGGAGTGCAAGCCCGAGGCGGTGACCAGCAAGACACAAGCG
GATGAGGAAATCTGCAGCACAAGCGACCTGGAGACCAGTCCGACAACCAG
TCCCATTCCCACTCCCGTGGAATCCGGATCCAGGGCAGGATCAGGACGGT
CCAGCCCGGTGCCATCGGATGCGGGCAGCACGGCGAGCGCCGGAAGCAGC
ATCGATGACAAAACCAAGCCGGGACTAGCAAGCTTTCTAGACCAT
BO28805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RB | 2214 | CG42708-PB | 1..2211 | 17..2227 | 11055 | 100 | Plus |
| CG42708-RC | 1977 | CG42708-PC | 129..1974 | 382..2227 | 9230 | 100 | Plus |
| CG42708-RD | 2151 | CG42708-PD | 303..2148 | 382..2227 | 9230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RB | 2970 | CG42708-RB | 64..2274 | 17..2227 | 11055 | 100 | Plus |
| CG42708-RC | 2741 | CG42708-RC | 200..2045 | 382..2227 | 9230 | 100 | Plus |
| CG42708-RD | 2912 | CG42708-RD | 494..2339 | 382..2227 | 9230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12671556..12672587 | 2057..1026 | 5160 | 100 | Minus |
| 2R | 25286936 | 2R | 12672664..12673037 | 1025..652 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 12674991..12675355 | 381..17 | 1825 | 100 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 651..412 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12671179..12671351 | 2227..2055 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:31 has no hits.
BO28805.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-19 10:42:35 Download gff for
BO28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RB | 64..2274 | 17..2229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:17 Download gff for
BO28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RB | 64..2274 | 17..2229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:21 Download gff for
BO28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RB | 64..2274 | 17..2229 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:21 Download gff for
BO28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12671177..12671349 | 2057..2229 | 98 | <- | Minus |
| 2R | 12671557..12672587 | 1026..2056 | 100 | <- | Minus |
| 2R | 12672664..12673037 | 652..1025 | 100 | <- | Minus |
| 2R | 12673100..12673339 | 412..651 | 100 | <- | Minus |
| 2R | 12673899..12673928 | 382..411 | 100 | <- | Minus |
| 2R | 12674991..12675355 | 17..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:17 Download gff for
BO28805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8558682..8558854 | 2057..2229 | 98 | <- | Minus |
| arm_2R | 8559062..8560092 | 1026..2056 | 100 | <- | Minus |
| arm_2R | 8560169..8560542 | 652..1025 | 100 | <- | Minus |
| arm_2R | 8560605..8560844 | 412..651 | 100 | <- | Minus |
| arm_2R | 8561404..8561433 | 382..411 | 100 | <- | Minus |
| arm_2R | 8562496..8562860 | 17..381 | 100 | | Minus |
BO28805.pep Sequence
Translation from 16 to 2245
> BO28805.pep
MGDRSWNLLQYATEKAPIPLDGYTAEEAAEFKDSIRQKIVDDLKSMTGEE
LIELVKQNAAKVEEEKVEIPPTEPLSGTEEGKERVQDDADLIDAGIIAEM
VAGLCTKSQKETFIKVITKYISSQRRHYSMRPHREQEQRNAEDVLFDMFA
SEETGLISMGKFLAGLKTTGIRRNDPRVRELMDNLKKVHKLNNYETGSSA
ETQHLNRETFKAVVAPNIVLIAKAFRQQFVIPDFTSFVKDIEDIYNRCKT
NTLGKLADYIPQLARYNPDSWGLSICTIDGQRFSIGDVDVPFTLQSCSKP
LTYAIALEKLGPKVVHSYVGQEPSGRNFNELVLDQNKKPHNPMINAGAIL
TCSLMNALVKPDMTSAEIFDYTMSWFKRLSGGEYIGFNNAVFLSEREAAD
RNYALGFYMRENKCFPKRTNLKEVMDFYFQCCSMETNCEAMSVIAASLAN
GGICPTTEEKVFRPEVIRDVLSIMHSCGTYDYSGQFAFKVGLPAKSGVSG
GMMLVIPNVMGIFAWSPPLDHLGNTVRGLQFCEELVSMFNFHRYDNLKHL
SNKKDPRKHRYETKGLSIVNLLFSAASGDVTALRRHRLSGMDITLADYDG
RTALHLAASEGHLECVKFLLEQCHVPHNPKDRWGNLPVDEAENFGHCHVV
EFLRSWAEKADQSSEECKPEAVTSKTQADEEICSTSDLETSPTTSPIPTP
VESGSRAGSGRSSPVPSDAGSTASAGSSIDDKTKPGLASFLDH
BO28805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-PB | 737 | CG8772-PB | 1..737 | 1..737 | 3859 | 100 | Plus |
| CG42708-PK | 727 | CG42708-PK | 1..727 | 1..737 | 3783 | 98.6 | Plus |
| CG42708-PC | 658 | CG8772-PC | 44..658 | 123..737 | 3247 | 100 | Plus |
| CG42708-PD | 716 | CG8772-PD | 102..716 | 123..737 | 3247 | 100 | Plus |
| CG42708-PF | 671 | CG8772-PF | 23..671 | 79..737 | 3226 | 93.6 | Plus |
