BO28819.complete Sequence
1522 bp assembled on 2011-08-24
GenBank Submission: KX797390
> BO28819.complete
GAAGTTATCAGTCGACATGTCGAACCTGTATGTGCTGTACGAGCATGCGG
CGGGCTTCTCGCTCTTCTCCGTCAAGGAGTTCGAAGAGGTGTCCATGTTC
CTGCCCCAGGTGGAGTCCTCGGTGACGGACCTCGCCAAGTTCAACTCAAT
TGTTAAGCTGGCTGGATTTGCACCTTTCAAGACGGCCATTGCCGCACTGG
AAAACATCAATGCCATATCCGAGGGCATAGTGCCGCAGGATCTGCTCTCC
TTCTTGGATGACTTCTTTGCCAAGCTGAAGAAGAAGAAGTGCACCCTGGG
TATTGCGGATGCCAAGCTGGGAGCTGCAATCACCGAGGCCATTGGCGTCC
AGTGCAGTCACTTTGGAGTGGTTCCTGAGATTCTGCGCGGCGTGCGATTC
CACTTCGCTAAGCTGGTCAAGGGATTCACCGACAAGTCCGCTGGCGTTGC
TCAGCTGGGTCTGGGCCACAGCTACTCGCGTGCCAAGGTCAAGTTCAATG
TTCATCGTTCCGACAACATGATCATCCAGTCGATTGCTTTGCTGGATCAG
TTGGATAAGGACGTAAATACCTTCTCTATGCGGATACGCGAGTGGTACTC
GTATCACTTCCCAGAACTGGTCAAAATCGTTCCCGACAATTACATGTTCG
CCAAGGCGGCCAAGTTCATCAAGGATCGCAAGAACCTCACGCAAGACCAG
CTGGAGGATCTTGAGAAGATCGTCATGGACTCCGCCAAGGCTCAGGCTAT
CATTGATGCCGCCAAGATGTCCATGGGCATGGACATCTCCATTGTTGATC
TGATGAACATTGAGCTGTTCGCAGAGCGCGTTGTCAAGCTTTCCGAGTAC
CGAAAGAAACTGTCTACCTACTTGCACAACAAGATGAACTTGGTGGCACC
CAATCTGCAGTCTTTGATTGGCGACCAGGTCGGTGCCCGCCTGATATCGC
ATGCCGGCAGCTTGACTAATCTGGCCAAGTACCCAGCATCTACAGTACAA
ATCCTGGGTGCCGAGAAGGCGCTCTTCCGTGCTCTAAAGACCCGCTCCAA
TACGCCCAAGTATGGTCTTATCTATCACTCCTCGTTCATTGGTCGAGCTG
GCCTGAAGAACAAGGGTCGCATCTCTCGATTCCTGGCCAACAAGTGCTCC
ATCGCGTCGCGTATCGATTGCTTCCTGGAACAGCCGACTAGCGTGTTTGG
CGAAACTCTTAAGCAACAGGTCGAAGATCGCCTCAAGTTCTACGAGTCCG
GCGATGTGCCGCGCAAGAACATTGAGGTAATGAAGGAGGCCATCGAGGCA
GCTGGTCAAGAGGCGGCAATCACTGTACAGTCCGAGAAAAAGAAGAAAAA
GAAGAAGCGAGCGGCTGAAGACGAGGGCGAGACGAATGGCGCCAGTAATG
GAAACGGAGCAGCCGCCGAGGCGGAAAATGGCAATGGCAACGATGATGGA
GAGCCAAAGAAGAAGAAGAAAAAGAAGAACAAAAACAAGGAAGCGGTGGA
GGCGGCAAGCTTTCTAGACCAT
BO28819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1491 | CG13849-PA | 1..1488 | 17..1504 | 7440 | 100 | Plus |
| nop5-RA | 1536 | CG10206-PA | 883..1070 | 929..1116 | 220 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1746 | CG13849-RA | 110..1600 | 14..1504 | 7455 | 100 | Plus |
| nop5-RA | 1813 | CG10206-RA | 1015..1202 | 929..1116 | 220 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22419241..22420323 | 1504..422 | 5415 | 100 | Minus |
| 3R | 32079331 | 3R | 22420387..22420791 | 423..19 | 2025 | 100 | Minus |
| 2L | 23513712 | 2L | 6917542..6917729 | 1116..929 | 220 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:01:51 has no hits.
BO28819.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:07 Download gff for
BO28819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 113..1600 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:53 Download gff for
BO28819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 113..1600 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:13 Download gff for
BO28819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 113..1600 | 17..1506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:13 Download gff for
BO28819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22420388..22420792 | 17..422 | 99 | | Minus |
| 3R | 22419239..22420322 | 423..1506 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:53 Download gff for
BO28819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18244961..18246044 | 423..1506 | 99 | <- | Minus |
| arm_3R | 18246110..18246514 | 17..422 | 99 | | Minus |
BO28819.pep Sequence
Translation from 16 to 1522
> BO28819.pep
MSNLYVLYEHAAGFSLFSVKEFEEVSMFLPQVESSVTDLAKFNSIVKLAG
FAPFKTAIAALENINAISEGIVPQDLLSFLDDFFAKLKKKKCTLGIADAK
LGAAITEAIGVQCSHFGVVPEILRGVRFHFAKLVKGFTDKSAGVAQLGLG
HSYSRAKVKFNVHRSDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPE
LVKIVPDNYMFAKAAKFIKDRKNLTQDQLEDLEKIVMDSAKAQAIIDAAK
MSMGMDISIVDLMNIELFAERVVKLSEYRKKLSTYLHNKMNLVAPNLQSL
IGDQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYG
LIYHSSFIGRAGLKNKGRISRFLANKCSIASRIDCFLEQPTSVFGETLKQ
QVEDRLKFYESGDVPRKNIEVMKEAIEAAGQEAAITVQSEKKKKKKKRAA
EDEGETNGASNGNGAAAEAENGNGNDDGEPKKKKKKKNKNKEAVEAASFL
DH
BO28819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-PA | 496 | CG13849-PA | 1..496 | 1..496 | 2488 | 100 | Plus |
| nop5-PA | 511 | CG10206-PA | 1..490 | 4..498 | 854 | 40.1 | Plus |
| Prp31-PA | 501 | CG6876-PA | 100..378 | 168..453 | 262 | 24.3 | Plus |
