BO28836.complete Sequence
1294 bp assembled on 2011-08-24
GenBank Submission: KX796885
> BO28836.complete
GAAGTTATCAGTCGACATGATGAGTCTAAGGATTTGCCTGCTGGCCACCT
GCCTCCTGGTGGCGGCCCATGCCTCCAAGGATGCCTCCAATGACCGACTG
AAGCCGACCAAGTGGCTGACCGCCACCGAGCTGGAGAACGTGCCCTCCCT
CAACGACATCACCTGGGAGCGTTTGGAGAATCAGCCGCTGGAGCAGGGCG
CCAAGGTGATCGAGAAGATCTACCACGTTGGCCAAATCAAGCACGATCTG
ACCCCCAGCTTTGTGCCCAGCCCGAGCAATGTGCCCGTCTGGATTATCAA
GTCCAATGGACAGAAGGTTGAGTGCAAGTTGAACAACTATGTGGAGACGG
CCAAGGCACAGCCCGGATTCGGCGAGGATGAGGTCACCATTGTCCTGACT
GGTCTGCCCAAGACCAGCCCCGCTCAGCAGAAGGCCATGCGCAGGTTGAT
CCAGGCCTACGTCCAGAAGTACAACCTCCAGCAGCTGCAGAAGAACGCCC
AGGAGCAGCAGCAGCAGCTCAAGAGCAGCGACTACGACTACACCAGCAGC
GAGGAGGCCGCTGACCAATGGAAATCCGCCAAGGCTGCCAGCGGCGATTT
GATCATCATTGACCTCGGCTCCACCCTGACCAACTTCAAACGCTACGCGA
TGCTGGATGTTCTGAACACCGGCGCCATGATCGGCCAGACCCTGATCGAT
CTGACCAACAAGGGTGTGCCCCAGGAGATCATCCATCTGATCGGCCAGGG
AATCAGCGCCCATGTGGCCGGAGCTGCTGGCAACAAGTACACCGCCCAAA
CCGGACACAAGCTGCGCCGCATCACCGGTCTGGATCCCGCCAAGGTGCTG
TCCAAGCGTCCCCAGATCCTGGGTGGTCTGTCCCGCGGCGATGCTGACTT
CGTTGATGCCATTCACACATCGACCTTCGCCATGGGCACGCCCATCCGTT
GCGGCGATGTTGACTTCTACCCCAACGGACCGTCCACCGGTGTTCCCGGC
TCCGAGAATGTGATCGAGGCTGTGGCCCGTGCCACCCGTTACTTTGCCGA
GTCTGTGCGTCCCGGTAGCGAGCGCAATTTCCCCGCCGTTCCGGCCAACT
CGCTGAAGCAGTACAAGGAGCAGGATGGCTTTGGCAAGCGCGCCTACATG
GGTCTCCAGATCGACTACGATCTGCGCGGTGACTACATCTTGGAGGTCAA
CGCCAAGAGCCCCTTCGGTCAGCGCAGCCCTGCCCACAAGCAGGCCGCCT
ACCATGGCATGCACCACGCCCAGAACGCAAGCTTTCTAGACCAT
BO28836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yp3-RB | 1263 | CG11129-PB | 1..1260 | 17..1276 | 6300 | 100 | Plus |
| Yp3-RA | 1263 | CG11129-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
| Yp1-RB | 1320 | CG2985-PB | 814..1221 | 800..1207 | 720 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yp3-RB | 1868 | CG11129-RB | 57..1316 | 17..1276 | 6300 | 100 | Plus |
| Yp3-RA | 1488 | CG11129-RA | 57..1316 | 17..1276 | 6300 | 100 | Plus |
| Yp1-RB | 1611 | CG2985-RB | 920..1327 | 800..1207 | 720 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13760324..13760995 | 605..1276 | 3360 | 100 | Plus |
| X | 23542271 | X | 13759869..13760251 | 222..604 | 1915 | 100 | Plus |
| X | 23542271 | X | 13759602..13759806 | 17..221 | 1025 | 100 | Plus |
| X | 23542271 | X | 10054807..10055214 | 800..1207 | 720 | 78.4 | Plus |
| X | 23542271 | X | 10051245..10051783 | 1254..716 | 520 | 73.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:02:40 has no hits.
BO28836.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:08 Download gff for
BO28836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yp3-RA | 58..1317 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:17 Download gff for
BO28836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yp3-RA | 58..1317 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:32 Download gff for
BO28836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yp3-RA | 57..1316 | 17..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:32 Download gff for
BO28836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13759602..13759806 | 17..221 | 100 | -> | Plus |
| X | 13759869..13760251 | 222..604 | 100 | -> | Plus |
| X | 13760324..13760995 | 605..1278 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:17 Download gff for
BO28836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13653635..13653839 | 17..221 | 100 | -> | Plus |
| arm_X | 13653902..13654284 | 222..604 | 100 | -> | Plus |
| arm_X | 13654357..13655028 | 605..1278 | 99 | | Plus |
BO28836.pep Sequence
Translation from 16 to 1294
> BO28836.pep
MMSLRICLLATCLLVAAHASKDASNDRLKPTKWLTATELENVPSLNDITW
ERLENQPLEQGAKVIEKIYHVGQIKHDLTPSFVPSPSNVPVWIIKSNGQK
VECKLNNYVETAKAQPGFGEDEVTIVLTGLPKTSPAQQKAMRRLIQAYVQ
KYNLQQLQKNAQEQQQQLKSSDYDYTSSEEAADQWKSAKAASGDLIIIDL
GSTLTNFKRYAMLDVLNTGAMIGQTLIDLTNKGVPQEIIHLIGQGISAHV
AGAAGNKYTAQTGHKLRRITGLDPAKVLSKRPQILGGLSRGDADFVDAIH
TSTFAMGTPIRCGDVDFYPNGPSTGVPGSENVIEAVARATRYFAESVRPG
SERNFPAVPANSLKQYKEQDGFGKRAYMGLQIDYDLRGDYILEVNAKSPF
GQRSPAHKQAAYHGMHHAQNASFLDH
BO28836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yp3-PB | 420 | CG11129-PB | 1..420 | 1..420 | 2178 | 100 | Plus |
| Yp3-PA | 420 | CG11129-PA | 1..420 | 1..420 | 2178 | 100 | Plus |
| Yp1-PB | 439 | CG2985-PB | 1..432 | 1..422 | 1229 | 54.4 | Plus |
| Yp1-PA | 439 | CG2985-PA | 1..432 | 1..422 | 1229 | 54.4 | Plus |
| Yp2-PB | 442 | CG2979-PB | 1..427 | 1..416 | 1099 | 49.7 | Plus |
